View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15166_high_3 (Length: 360)
Name: NF15166_high_3
Description: NF15166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15166_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 2157223 - 2156909
Alignment:
| Q |
26 |
accggagacttgttgagttcccacccattttacaatgttgcataaaatgatcagataagcagagaggatcaaccgccgatgtaccaatccatcattgaag |
125 |
Q |
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| T |
2157223 |
accggagacttgttgagttcccacccattttaccatgttgcataaaatgatcagataagtagagaggatcaaccgccgatgtaccaatccatcattgaag |
2157124 |
T |
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| Q |
126 |
aagttgccaaatagaaccaaaatgagaagataaaaacagatcttccaccgattcctccaaactacaaacactgacacaa-aaaattatgttgaagaatgc |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2157123 |
aagttgccaaatagaaccaaaatgagaagataaaaacagatcttccaccgattcctccaaactacaaacactgacacaaaaaaattatgttgaagaatgc |
2157024 |
T |
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| Q |
225 |
cacgcacgcctatgtgagttattctttgagggaagttggttgtaaggaagacgtcacgcaaaaaattataagaagccctttcatctcatacggctactcc |
324 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2157023 |
cacgcacgcctatgtgagttat--tttgagggaagttggttctaatgaagacgtcacgcaaaaaattataagaagccctttcatctcatacggctactcc |
2156926 |
T |
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| Q |
325 |
ttcatgtgtgtgatgat |
341 |
Q |
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||||||||||| ||||| |
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| T |
2156925 |
ttcatgtgtgtaatgat |
2156909 |
T |
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