View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15167_high_1 (Length: 675)
Name: NF15167_high_1
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 220 - 658
Target Start/End: Complemental strand, 28320431 - 28319993
Alignment:
| Q |
220 |
gaccactttagacactagctcatattgtttagcacatgtcactttcaattttgattactcacaaaaattagcaacttattcaatgaatatgcatttaaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320431 |
gaccactttagacactagctcatattgtttggcacatgtcactttcaattttgattactcacaaaaattagcaacttattcaatgaatatgcatttaaat |
28320332 |
T |
|
| Q |
320 |
caatgattgttttgactattttgatatccggttaattttggtttggaccaccctatgaatatgcatttaaatcaataagttttactactttcttattttt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28320331 |
caatgattgttttgactattttgatatccggttaattttggtttggaccactctatgaatatacatttaaatcaataagttttactactttcttattttt |
28320232 |
T |
|
| Q |
420 |
caatcattaatcctcagtttttctaatatcataggctatatttaataattaaatttggaaatcatgttttgttaggacttatttgttgctgggattgaca |
519 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320231 |
caatcattaatcctcagtttttttaatatcataggctatatttaataattaaatttggaaatcatgttttgttaggacttatttgttgctgggattgaca |
28320132 |
T |
|
| Q |
520 |
caacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaagg |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320131 |
caacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaagg |
28320032 |
T |
|
| Q |
620 |
tgaaaccattgaagaatcacacattttgaagttaccttt |
658 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
28320031 |
tgaaaccattgaagaatcacacattttcaagttaccttt |
28319993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 28320651 - 28320498
Alignment:
| Q |
1 |
gttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttgttgaggtttgcaatgatgtgttagattcacttcttaat |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28320651 |
gttgtgtgagatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttgttgaggtttgcaatgatgtgttagattcacttcttaat |
28320552 |
T |
|
| Q |
101 |
attaatattggagaagcaaattcggaattgagccgcaatgagatggtgcatctg |
154 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
28320551 |
attaatattggagaagcaacttcggaattgagccgcagtgagatggtgcatctg |
28320498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 465 - 657
Target Start/End: Complemental strand, 28296354 - 28296161
Alignment:
| Q |
465 |
taattaaatttggaaatcatgttttg-ttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgt |
563 |
Q |
| |
|
||||| || |||||||| ||||||| |||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| || |||||| ||||| |
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|
| T |
28296354 |
taattgaacttggaaatgatgtttttcttaggatttgtttgttgctggtattgacacaacatcaagcacgattgaatggattatggcggagctattacgt |
28296255 |
T |
|
| Q |
564 |
aatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttacctt |
657 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||||| ||||||||||| | |||| |||||||||| |
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| T |
28296254 |
aaccctgacaaattaacaaaagtaagaaaggagttatgtcaagcaattggaaaagatgaaactgttgaagaatcaaatatttccaagttacctt |
28296161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 28331129 - 28330974
Alignment:
| Q |
5 |
tgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagattcacttcttaata |
101 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| || ||| ||||||||||||||||||||||||||||| | |
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|
| T |
28331129 |
tgtgatatttttgatggaattattgaaaaaagaattagttcaagatcttccaaagttgattatgtggtgtgcaatgatgtgttagattcacttcttaaca |
28331030 |
T |
|
| Q |
102 |
tta---atattggagaagcaaattcggaattgagccgcaatgagatggtgcatctg |
154 |
Q |
| |
|
| || |||||||| | | || |||||||| |||||||||||||||||||||| |
|
|
| T |
28331029 |
acaaccatgttggagaaaccactttggaattgacccgcaatgagatggtgcatctg |
28330974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 28304475 - 28304379
Alignment:
| Q |
5 |
tgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttgttgaggtttgcaatgatgtgttagattcacttcttaata |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
28304475 |
tgtgatattttttatggaattattgaagaaagaatttgttcaagagcttccaaagctgatgaggtttgcaatgatgggttagattcacttctcaata |
28304379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 657
Target Start/End: Complemental strand, 28329026 - 28328840
Alignment:
| Q |
471 |
aatttggaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctg |
570 |
Q |
| |
|
||||||||||| || ||||| |||| |||||| |||||||||||||||||||||||| || |||||||||| ||| ||||||||| ||||||| |||| |
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|
| T |
28329026 |
aatttggaaattatattttggcaggatttattttttgctgggattgacacaacatcaaacacgattgaatggactatggcagagctattacgtaaccctg |
28328927 |
T |
|
| Q |
571 |
acaaattaacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttacctt |
657 |
Q |
| |
|
|||| || |||| ||||||||| ||||||||| ||| || |||| |||| | || ||||||||| | |||| |||||||||| |
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|
| T |
28328926 |
gcaaactagataaagcaagaaaagaattatgtcaagtaatgggaaaagatgaagcaatagaagaatcaaatatttccaagttacctt |
28328840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 477 - 658
Target Start/End: Original strand, 28290625 - 28290806
Alignment:
| Q |
477 |
gaaatcatgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaat |
576 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||| || | |||||||||||| || ||| ||| |
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|
| T |
28290625 |
gaaatgatgttttgttaggatttatttgctgctgggattgacacaacttcaagcacaattgaatggatcatggtagagctactacgcaaccctagcaata |
28290724 |
T |
|
| Q |
577 |
taacaaaagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcacacattttgaagttaccttt |
658 |
Q |
| |
|
| ||||||| ||||| ||| |||| | || ||||| |||| ||||| |||||||||||| | ||||| ||||| ||||| |
|
|
| T |
28290725 |
tgacaaaagcaagaacagaattatctaaagttattggtaaagatgaaataattgaagaatcagatatttttaagttgccttt |
28290806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 484 - 640
Target Start/End: Complemental strand, 28303510 - 28303353
Alignment:
| Q |
484 |
tgttttgttaggacttatttgttgctgggattgacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaatt-aacaa |
582 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||| ||||||| | ||||| ||| |||| |||||||||||| |||| || ||| ||| || || |
|
|
| T |
28303510 |
tgttttgttatgatttatttgttgccgggattgacacatcatcaaggacgattgagtgggttatggcagagctactatgtaacccaaacacattaaaaaa |
28303411 |
T |
|
| Q |
583 |
aagtaagaaaagagttatgtcaaacaattggcaaaggtgaaaccattgaagaatcaca |
640 |
Q |
| |
|
|| |||||||||||||||| || ||||||| |||| |||||| |||||||||||||| |
|
|
| T |
28303410 |
aaccaagaaaagagttatgtgaagcaattggtaaagatgaaacaattgaagaatcaca |
28303353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 28296592 - 28296431
Alignment:
| Q |
1 |
gttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaaagttg---ttgaggtttgcaatgatgtgttagattcacttctt |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||| | || ||||||| | |||||||||||| |||||||||||| |
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|
| T |
28296592 |
gttgtgtgatatttttaatggaattattgaagaaagaatttgttcaagagcttccaatggtgattttgaggtgttcaatgatgtgttggattcacttctt |
28296493 |
T |
|
| Q |
98 |
aat------attaatattggagaagcaaattcggaattgagccgcaatgagatggtgcatct |
153 |
Q |
| |
|
||| | || |||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
28296492 |
aatagcaacaatattattggagaaagcacttatgaattgagccgcaatgagatggtgcatct |
28296431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 516 - 645
Target Start/End: Complemental strand, 28307300 - 28307171
Alignment:
| Q |
516 |
gacacaacatcaagcataattgaatggattattgcagagctactacgtaatcctgacaaattaacaaaagtaagaaaagagttatgtcaaacaattggca |
615 |
Q |
| |
|
||||| |||||||||| ||||| ||| | || ||||||||| || |||||||||| |||||| |||||| |||||||||||||||| || |||||| | |
|
|
| T |
28307300 |
gacactacatcaagcaccattgagtgggtcatggcagagctattaggtaatcctgaaaaattagcaaaagcaagaaaagagttatgtaaagaaattggta |
28307201 |
T |
|
| Q |
616 |
aaggtgaaaccattgaagaatcacacattt |
645 |
Q |
| |
|
||| |||||| |||||||||||||| |||| |
|
|
| T |
28307200 |
aagatgaaacaattgaagaatcacatattt |
28307171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 28310080 - 28309927
Alignment:
| Q |
1 |
gttgtgtgatatttttgatggaattattgaagaaagaattcgttcaagatcctccaa---agttgttgaggtttgcaatgatgtgttagattcacttctt |
97 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| | | | |||| ||||||||||||||||||||||||||| |
|
|
| T |
28310080 |
gttgtgtgagatttttgatggaataattgaagaaagaattagttcaagagattccaattctgattctaaggtgtgcaatgatgtgttagattcacttctt |
28309981 |
T |
|
| Q |
98 |
aatattaatattggagaagcaaattcggaattgagccgcaatgagatggtgcat |
151 |
Q |
| |
|
||| ||||||| |||| | | | |||||||||||||||| ||||||||| |
|
|
| T |
28309980 |
aattacaatattgaagaaaccactaataaattgagccgcaatgaaatggtgcat |
28309927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 28288683 - 28288716
Alignment:
| Q |
66 |
aggtttgcaatgatgtgttagattcacttcttaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28288683 |
aggtttgcaatgatgtgttagattcacttcttaa |
28288716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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