View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_high_11 (Length: 423)

Name: NF15167_high_11
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_high_11
NF15167_high_11
[»] chr8 (4 HSPs)
chr8 (8-407)||(12598018-12598413)
chr8 (212-263)||(38815251-38815302)
chr8 (213-263)||(3821182-3821232)
chr8 (219-259)||(4185449-4185489)
[»] chr5 (2 HSPs)
chr5 (213-258)||(16017131-16017176)
chr5 (215-263)||(2566194-2566242)
[»] chr3 (7 HSPs)
chr3 (175-263)||(53785634-53785717)
chr3 (213-263)||(26856861-26856911)
chr3 (233-265)||(30199920-30199952)
chr3 (213-255)||(39583336-39583378)
chr3 (212-264)||(38146013-38146065)
chr3 (215-263)||(52411990-52412038)
chr3 (215-263)||(52741611-52741659)
[»] chr6 (2 HSPs)
chr6 (171-253)||(959502-959579)
chr6 (212-263)||(32115675-32115726)
[»] scaffold1768 (1 HSPs)
scaffold1768 (279-319)||(224-264)
[»] chr7 (3 HSPs)
chr7 (212-260)||(21326940-21326988)
chr7 (212-263)||(19277250-19277301)
chr7 (175-263)||(5825198-5825281)
[»] scaffold0490 (1 HSPs)
scaffold0490 (212-263)||(6291-6342)
[»] scaffold0148 (1 HSPs)
scaffold0148 (212-263)||(33207-33258)
[»] chr4 (6 HSPs)
chr4 (212-263)||(3329953-3330004)
chr4 (212-263)||(4419220-4419271)
chr4 (212-263)||(54927424-54927475)
chr4 (213-263)||(43849447-43849497)
chr4 (214-263)||(16955419-16955468)
chr4 (218-263)||(32755797-32755842)
[»] chr1 (1 HSPs)
chr1 (212-263)||(21472960-21473011)


Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 12598413 - 12598018
Alignment:
Q  8 caataacatcgtcccaaataatcagccaccgtatccattcctccttctcatacaaaaaacaaacaagcagttcctcagcagaaatctaatagtttcattc 107  Q
    |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |    
T  12598413 caataaaatcgtcccaaataatcagccactgtatccattactccttctcatacaaaaaacaa----gcagttcctcagcagaaatctaatagtttcatcc 12598318  T
Q  108 cattttagatagtaacacaggaattagaagcaggcaggcaacatggcttctaaacctttgtgaatgacaaaaccaatcctcttaaacattacattcatag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  12598317 cattttagatagtaacacaggaattagaagcaggcaggcaacatggcttctaaacctttgggaatgacaaaaccaatcctcttaaacattacattcataa 12598218  T
Q  208 agacgacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaatatcttaagtgtattctagaaaacaaaaagtgtcaaacacaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  12598217 agacgacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaatatccgaagtgtattctagaaaacaaaaagtgtcaaacacaaat 12598118  T
Q  308 gctataaaagcaagttaaatgaaacacgttttctcatgtttagccgccactttgcattttaacgcggctttgagggttcctcatccaaacttcataacat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12598117 gctataaaagcaagttaaatgaaacacgttttctcatgtttagccgccactttgcattttgacgcggctttgagggttcctcatccaaacttcataacat 12598018  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 38815251 - 38815302
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||  || |||||||||||||||||||||||||| |||||||    
T  38815251 gacctaggagacatgacattgctatgcatgaccctttgaactctatgtagaa 38815302  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 3821182 - 3821232
Alignment:
Q  213 acctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||||  || ||||||||||| |||||||||||||| |||||||    
T  3821182 acctaggagacatgacattgctatgcattaccctttgaactctatgtagaa 3821232  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 4185489 - 4185449
Alignment:
Q  219 gagacacaacgttgctatgcatgaccctttgaactctttgt 259  Q
    |||||||||| |||||||||||||| |||||||| ||||||    
T  4185489 gagacacaacattgctatgcatgactctttgaaccctttgt 4185449  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 16017131 - 16017176
Alignment:
Q  213 acctaggagacacaacgttgctatgcatgaccctttgaactctttg 258  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  16017131 acctaggagacacaacattgctatgcatgaccttttgaactctttg 16017176  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 2566242 - 2566194
Alignment:
Q  215 ctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  2566242 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 2566194  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 53785634 - 53785717
Alignment:
Q  175 caaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||| ||||||| |||||||| ||     |||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  53785634 caaaaccaatcctcgtaaacataacattcatgga-----cctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 53785717  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 26856911 - 26856861
Alignment:
Q  213 acctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||||  || |||||||||||||||||||||||||| |||||||    
T  26856911 acctaggagacatgacattgctatgcatgaccctttgaactctatgtagaa 26856861  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 30199920 - 30199952
Alignment:
Q  233 ctatgcatgaccctttgaactctttgtagaata 265  Q
    |||||||||||||||||||||||||||||||||    
T  30199920 ctatgcatgaccctttgaactctttgtagaata 30199952  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 39583378 - 39583336
Alignment:
Q  213 acctaggagacacaacgttgctatgcatgaccctttgaactct 255  Q
    ||||||||||||  || ||||||||||||||||||||||||||    
T  39583378 acctaggagacatgacattgctatgcatgaccctttgaactct 39583336  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 38146013 - 38146065
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaat 264  Q
    |||||||||||||  || ||| ||||||||||||||||||||||  |||||||    
T  38146013 gacctaggagacatgacattgttatgcatgaccctttgaactctaagtagaat 38146065  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 52412038 - 52411990
Alignment:
Q  215 ctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||  || ||| |||||||||||||||||||||| |||||||    
T  52412038 ctaggagacatgacattgttatgcatgaccctttgaactctatgtagaa 52411990  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 52741659 - 52741611
Alignment:
Q  215 ctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  52741659 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 52741611  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 959502 - 959579
Alignment:
Q  171 atgacaaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaact 253  Q
    ||||||||| |||||||| ||||||  |||||||| ||     ||||||||||||||| ||||||||||||||| ||||||||    
T  959502 atgacaaaatcaatcctcgtaaacacaacattcatgga-----cctaggagacacaacattgctatgcatgaccttttgaact 959579  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 32115675 - 32115726
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||  || ||| ||||||||||| ||||||||||||||||||    
T  32115675 gacctaggagacatgacattgttatgcatgaccttttgaactctttgtagaa 32115726  T

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Target: scaffold1768 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 264 - 224
Alignment:
Q  279 ctagaaaacaaaaagtgtcaaacacaaatgctataaaagca 319  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  264 ctagaaaaccaaaagtgtcaaacacaaatggtataaaagca 224  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 21326988 - 21326940
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgta 260  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||| ||||    
T  21326988 gacctaggagacataacattgctatgcatgaccttttgaactctatgta 21326940  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 19277250 - 19277301
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  19277250 gacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 19277301  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 5825198 - 5825281
Alignment:
Q  175 caaaaccaatcctcttaaacattacattcatagagacgacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||| ||||||  |||| ||||     ||||||||||||| ||| ||||||||||| |||||||  ||||| |||||||    
T  5825198 caaaaccaatcctcgtaaacacaacatccata-----gacctaggagacataacattgctatgcataaccctttcgactctatgtagaa 5825281  T

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Target: scaffold0490 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 6291 - 6342
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  6291 gacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 6342  T

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Target: scaffold0148 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 33207 - 33258
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||||| ||  ||||||||||||||| |||||||||| |||||||    
T  33207 gacctaggagacataaaattgctatgcatgaccttttgaactctatgtagaa 33258  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 3329953 - 3330004
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||||| ||| ||||||||||| |||||||| ||||| |||||||    
T  3329953 gacctaggagacataacattgctatgcataaccctttggactctatgtagaa 3330004  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 4419220 - 4419271
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||||| ||| ||| ||||||| |||||||||||||| |||||||    
T  4419220 gacctaggagacataacattgttatgcataaccctttgaactctatgtagaa 4419271  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 54927424 - 54927475
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||| |||||||||| ||| |||||||||| |||||| ||||||||||||    
T  54927424 gacctatgagacacaacattgttatgcatgactctttgagctctttgtagaa 54927475  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 43849497 - 43849447
Alignment:
Q  213 acctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||||  |||| ||| ||||||||||| ||||||||||||||||||    
T  43849497 acctaggagatgcaacattgttatgcatgaccatttgaactctttgtagaa 43849447  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 16955419 - 16955468
Alignment:
Q  214 cctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  16955419 cctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 16955468  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 32755842 - 32755797
Alignment:
Q  218 ggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    ||||||||| | ||||||||||||||| || |||||||||||||||    
T  32755842 ggagacacaccattgctatgcatgaccgttggaactctttgtagaa 32755797  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 21472960 - 21473011
Alignment:
Q  212 gacctaggagacacaacgttgctatgcatgaccctttgaactctttgtagaa 263  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||||||    
T  21472960 gacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaa 21473011  T

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