View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_high_27 (Length: 293)
Name: NF15167_high_27
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 11577205 - 11577471
Alignment:
| Q |
13 |
gaagcaaaggtcttccatattgagctaccatattaacccaagctgtgcaagtaaacctcactgccaagtgcagctctccattcttttttaaaccgttagg |
112 |
Q |
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| T |
11577205 |
gaagcaaaggtcttccatattgagctaccatattaacccaagctgtgcaagtaaacctcactgccaagtgcagctctccattcttttttaaaccgttagg |
11577304 |
T |
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| Q |
113 |
ttgaagaaccaaaagaggataataatgagtataaactctatcagtttcaagagttgataaccttattctcacctttccaattctctgatctttgtggtca |
212 |
Q |
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| T |
11577305 |
ttgaagaaccaaaagaggatagtaatgagtataaactctatcagtttcaagagttgataaccttattctcacctttccaatcctctgatctttgtggtcg |
11577404 |
T |
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| Q |
213 |
ctgctaccattgaggtggtgattgtcaaaaacactaactgtgatcacagtgcatggatcatgaacct |
279 |
Q |
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| T |
11577405 |
ctgctaccattgaggtggtgattgtcaaaaacactaactgtgatcacagtgcatggatcatgaacct |
11577471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 24950246 - 24950310
Alignment:
| Q |
123 |
aaaagaggataataatgagtataaactctatcagtttcaagagttgataaccttattctcacctt |
187 |
Q |
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| T |
24950246 |
aaaagaggatatgaatgtgtgtaaactctatcggtttcaagagtagataaccgaattcttacctt |
24950310 |
T |
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