View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_high_28 (Length: 293)

Name: NF15167_high_28
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_high_28
NF15167_high_28
[»] chr2 (4 HSPs)
chr2 (11-211)||(2354650-2354850)
chr2 (157-211)||(2353013-2353067)
chr2 (213-275)||(13922186-13922248)
chr2 (215-275)||(11828960-11829020)
[»] chr8 (2 HSPs)
chr8 (213-275)||(4076980-4077042)
chr8 (212-275)||(3780395-3780458)
[»] chr5 (5 HSPs)
chr5 (213-275)||(25955996-25956058)
chr5 (212-275)||(38280309-38280372)
chr5 (213-275)||(42250117-42250179)
chr5 (213-275)||(1501405-1501467)
chr5 (213-275)||(7886356-7886418)
[»] chr1 (5 HSPs)
chr1 (213-275)||(20186877-20186939)
chr1 (213-275)||(30339637-30339699)
chr1 (213-275)||(51787273-51787335)
chr1 (218-275)||(9673005-9673062)
chr1 (213-274)||(43740444-43740505)
[»] chr3 (6 HSPs)
chr3 (213-272)||(29836808-29836867)
chr3 (216-275)||(49786397-49786456)
chr3 (217-275)||(47940831-47940889)
chr3 (213-275)||(8152978-8153042)
chr3 (213-259)||(8436948-8436994)
chr3 (218-275)||(48779009-48779066)
[»] chr7 (10 HSPs)
chr7 (217-275)||(2286463-2286521)
chr7 (213-275)||(11765708-11765770)
chr7 (213-275)||(25185969-25186031)
chr7 (213-275)||(496684-496746)
chr7 (216-275)||(7527300-7527359)
chr7 (213-275)||(48057735-48057797)
chr7 (213-275)||(42535250-42535312)
chr7 (219-275)||(23844642-23844698)
chr7 (213-275)||(40855188-40855250)
chr7 (213-275)||(31427296-31427360)
[»] chr4 (2 HSPs)
chr4 (213-275)||(52055184-52055246)
chr4 (213-275)||(1158291-1158353)
[»] chr6 (1 HSPs)
chr6 (217-275)||(33594555-33594613)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 2354850 - 2354650
Alignment:
Q  11 cacagatctttctactgacaaggcagaaatgatttcaaggtttctcagagacccaaagtcttacttacgtctcaagatcaactgatcacaaaataacaaa 110  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2354850 cacagatctttctactgacaaggcagagatgatttcaaggtttctcagagacccaaagtcttacttacgtcccaagatcaactgatcacaaaataacaaa 2354751  T
Q  111 gaaatccagattcaagtgatggggatatttgttaattccttcttcatttattgttattaacttctgaataaaattgtatttttagtttcaattttatcaa 210  Q
    | |||| ||||||||||||||||||||  |||||||||||||||| ||||| ||||||||||| || ||||||| |||||||||||||||||||||||||    
T  2354750 ggaatcaagattcaagtgatggggatagatgttaattccttcttcttttatcgttattaacttttgtataaaatagtatttttagtttcaattttatcaa 2354651  T
Q  211 t 211  Q
    |    
T  2354650 t 2354650  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 2353067 - 2353013
Alignment:
Q  157 tttattgttattaacttctgaataaaattgtatttttagtttcaattttatcaat 211  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  2353067 tttattgttgttaacttctgaataaaatggtatttttagtttcaattttatcaat 2353013  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 13922186 - 13922248
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||||||    
T  13922186 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgac 13922248  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 11828960 - 11829020
Alignment:
Q  215 tggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  11828960 tggtgagacatgcacactcataggtggcatacacacttaaacctccacataaatatgtgac 11829020  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 4077042 - 4076980
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4077042 agtgatgatacatgcatacccataggtggcatacacacttaaacctccacacaaacatgtgac 4076980  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 3780458 - 3780395
Alignment:
Q  212 aagtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3780458 aagtagtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgac 3780395  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 25956058 - 25955996
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  25956058 agtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgac 25955996  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 38280372 - 38280309
Alignment:
Q  212 aagtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  38280372 aagtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgac 38280309  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 42250117 - 42250179
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||||||||||||||||  || |||| |||||||||||||||||||||||||||||    
T  42250117 agtggtgatacatgcacacccataaatgacatagacacttaaacctccacacaaacatgtgac 42250179  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 1501467 - 1501405
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||| |||||| ||||    
T  1501467 agtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgac 1501405  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 7886356 - 7886418
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||| |||||| ||  ||||||| ||||||||||||||||||||||||||||||||||    
T  7886356 agtggtgattcatgcatacttataggtgacatacacacttaaacctccacacaaacatgtgac 7886418  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 20186939 - 20186877
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  20186939 agtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgac 20186877  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 30339637 - 30339699
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  30339637 agtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgac 30339699  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 51787273 - 51787335
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  51787273 agtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgac 51787335  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 9673062 - 9673005
Alignment:
Q  218 tgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgac 9673005  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 43740505 - 43740444
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtga 274  Q
    ||||||||| |||| ||| |||||| |  ||| |||||||||||||||||||||||||||||    
T  43740505 agtggtgatccatgaacatccatagatcacatgcacacttaaacctccacacaaacatgtga 43740444  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 29836867 - 29836808
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgt 272  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  29836867 agtggtgatacatgcacactcataggtggcatacacacttaaacctccacacaaatatgt 29836808  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 49786397 - 49786456
Alignment:
Q  216 ggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgac 49786456  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 47940831 - 47940889
Alignment:
Q  217 gtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  47940831 gtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgac 47940889  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 8152978 - 8153042
Alignment:
Q  213 agtggtgatacat--gcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||  ||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  8152978 agtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgac 8153042  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 8436994 - 8436948
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctc 259  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||||    
T  8436994 agtggtgatatatgtacacccataggtggcatacacatttaaacctc 8436948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 48779066 - 48779009
Alignment:
Q  218 tgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||| ||| |||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgac 48779009  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 2286463 - 2286521
Alignment:
Q  217 gtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  2286463 gtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgac 2286521  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 11765708 - 11765770
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  11765708 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgac 11765770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 25186031 - 25185969
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  25186031 agtggtgatgcatgcacactcataggtgacatacacacttaaacctccacacaaacatgtgac 25185969  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 496684 - 496746
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  496684 agtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgac 496746  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 7527359 - 7527300
Alignment:
Q  216 ggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||||| |  ||| |||||||||||||||||||||||||||||||||||||||    
T  7527359 ggtgatacatgcatattcattggtggcatacacacttaaacctccacacaaacatgtgac 7527300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 48057797 - 48057735
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| |||||||||||||||||||| | |||||| |||||| |||||||||||    
T  48057797 agtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgac 48057735  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 42535312 - 42535250
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||| ||||| ||| |||| |||||||| |||||||||||||||||||||| |||||||||||    
T  42535312 agtgatgatatatgtacactcataggtgacatacacacttaaacctccacataaacatgtgac 42535250  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 23844642 - 23844698
Alignment:
Q  219 gatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||| ||||||||  |||||||||| ||| ||||||| |||||||||||    
T  23844642 gatacatgcacatccataggtaacatacacactcaaatctccacataaacatgtgac 23844698  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 40855250 - 40855188
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||| |||| |||||| | ||||| |||| ||| ||||||||||||| |||||||||||||||    
T  40855250 agtgatgatgcatgcatatccatatgtggtatatacacttaaacctctacacaaacatgtgac 40855188  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 31427360 - 31427296
Alignment:
Q  213 agtggtgatacatgcacacccatag--gtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||||||| ||||||  |||||||||| | |||||||||| || ||| |||||||    
T  31427360 agtggtgatacatgcacatccataggtgtggcatacataattaaacctccgcataaatatgtgac 31427296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 52055246 - 52055184
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  52055246 agtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgac 52055184  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 1158353 - 1158291
Alignment:
Q  213 agtggtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||| ||||||||||||| | ||||  ||| ||||||||||||||||||||||||||||||||    
T  1158353 agtgatgatacatgcacatcgatagaaggcgtacacacttaaacctccacacaaacatgtgac 1158291  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 33594613 - 33594555
Alignment:
Q  217 gtgatacatgcacacccataggtggcatacacacttaaacctccacacaaacatgtgac 275  Q
    |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  33594613 gtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgac 33594555  T

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