View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_high_37 (Length: 219)
Name: NF15167_high_37
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 27539705 - 27539515
Alignment:
| Q |
16 |
gggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgttagatcagaggcagtgcccgcagttttaccgactcctatggt |
115 |
Q |
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| T |
27539705 |
gggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgtcagatcagaggcagtgcccgcagttttaccgactcctatggt |
27539606 |
T |
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| Q |
116 |
aattcctaccttccaaatgaataattttagtaagactcttgagaatgtttccgaagagataattggaaataa-ctcgaggggaattatatg |
205 |
Q |
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| T |
27539605 |
aattcctaccttccaaatgaatagttttagtatgcctcttgagaatgtttccgatgagataattgaaaataatctcgaggggaattatatg |
27539515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 16599559 - 16599369
Alignment:
| Q |
16 |
gggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgttagatcagaggcagtgcccgcagttttaccgactcctatggt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||| |
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| T |
16599559 |
gggaagcaattccgatccaagaggaaacacatgatgctcaggagggagtaattcctgtcagatcagaggcaatgccctcagttttaccgactcctatggt |
16599460 |
T |
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| Q |
116 |
aattcctaccttccaaatgaataattttagtaagactcttgagaatgtttccgaagagataattggaaataa-ctcgaggggaattatatg |
205 |
Q |
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| T |
16599459 |
aattcctaccttccaaattaataactttagtaagcctcttgagaatgtttccaatgagataattgaaaataatctcgaggggaattgtatg |
16599369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 15200245 - 15200147
Alignment:
| Q |
16 |
gggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgttagatcagaggcagtgcccgcagttttaccgactcctatgg |
114 |
Q |
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|||||||||||||| ||||||| |||| ||| |||||||| |||| |||||||||||| |||||||||| ||| | |||||||||||||||||||||| |
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| T |
15200245 |
gggaagcaattccggtccaagatgaaatacaggatgcgcaagaggaagtagttcctgtcagatcagaggtagtagctgcagttttaccgactcctatgg |
15200147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 15219330 - 15219231
Alignment:
| Q |
16 |
gggaagcaattccgatccaagaggaaacacatgatgcgcaggagggagtagttcctgttagatcagaggcagtgcccgcagttttaccgactcctatggt |
115 |
Q |
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|||||||||||||| ||||||| |||| ||| ||||||| |||| |||||||||||| |||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
15219330 |
gggaagcaattccggtccaagatgaaatacaggatgcgcgagaggaagtagttcctgtcagatcataggcagtgcttgcagttttaccaactcctatggt |
15219231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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