View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_high_5 (Length: 534)

Name: NF15167_high_5
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_high_5
NF15167_high_5
[»] chr4 (49 HSPs)
chr4 (95-250)||(31414761-31414918)
chr4 (1-77)||(19901920-19901996)
chr4 (1-77)||(5763164-5763240)
chr4 (5-77)||(34778418-34778490)
chr4 (1-77)||(56558276-56558352)
chr4 (1-77)||(3952172-3952248)
chr4 (1-77)||(23610639-23610715)
chr4 (4-77)||(18207045-18207118)
chr4 (4-77)||(33262557-33262630)
chr4 (1-77)||(5416468-5416543)
chr4 (1-73)||(24073617-24073689)
chr4 (5-77)||(30567898-30567970)
chr4 (1-76)||(56269078-56269153)
chr4 (1-77)||(12312477-12312554)
chr4 (4-77)||(39862514-39862587)
chr4 (1-77)||(33247132-33247208)
chr4 (4-77)||(38079725-38079798)
chr4 (1-77)||(56453822-56453898)
chr4 (1-77)||(5524444-5524520)
chr4 (1-77)||(37002253-37002329)
chr4 (1-71)||(1871280-1871350)
chr4 (1-71)||(36688190-36688260)
chr4 (1-70)||(23474115-23474184)
chr4 (1-77)||(47922368-47922445)
chr4 (25-77)||(31862246-31862298)
chr4 (1-77)||(42010114-42010190)
chr4 (9-77)||(47922085-47922153)
chr4 (31-77)||(12241440-12241486)
chr4 (4-76)||(1015859-1015931)
chr4 (97-197)||(39310396-39310496)
chr4 (98-197)||(24484784-24484883)
chr4 (5-71)||(34927488-34927555)
chr4 (4-70)||(13493276-13493342)
chr4 (7-77)||(48084533-48084603)
chr4 (103-203)||(32158805-32158906)
chr4 (1-66)||(25219003-25219070)
chr4 (9-69)||(40215455-40215515)
chr4 (1-71)||(26428971-26429042)
chr4 (103-166)||(32159521-32159584)
chr4 (103-170)||(44095310-44095377)
chr4 (1-43)||(12153185-12153227)
chr4 (1-66)||(17493010-17493076)
chr4 (15-77)||(25442190-25442252)
chr4 (1-66)||(32146510-32146576)
chr4 (5-66)||(46238974-46239036)
chr4 (1-66)||(53526096-53526162)
chr4 (1-66)||(55160372-55160438)
chr4 (97-166)||(5469963-5470032)
chr4 (97-133)||(44516785-44516821)
[»] chr3 (36 HSPs)
chr3 (97-231)||(37886654-37886788)
chr3 (1-77)||(27033648-27033724)
chr3 (1-77)||(34373828-34373904)
chr3 (1-77)||(43719949-43720025)
chr3 (7-77)||(34373593-34373663)
chr3 (93-233)||(55444512-55444653)
chr3 (1-77)||(2229980-2230056)
chr3 (1-77)||(19830433-19830509)
chr3 (1-77)||(12402963-12403039)
chr3 (1-77)||(46167390-46167466)
chr3 (1-77)||(31523670-31523746)
chr3 (1-77)||(48084816-48084893)
chr3 (103-250)||(40613714-40613862)
chr3 (5-77)||(42613077-42613149)
chr3 (1-77)||(49679272-49679348)
chr3 (1-67)||(40851781-40851847)
chr3 (1-77)||(550818-550894)
chr3 (1-58)||(24754673-24754730)
chr3 (1-58)||(24763670-24763727)
chr3 (1-77)||(40810357-40810434)
chr3 (5-77)||(1995441-1995513)
chr3 (97-143)||(44311393-44311439)
chr3 (103-225)||(55439871-55439993)
chr3 (97-170)||(40809579-40809652)
chr3 (5-70)||(54911658-54911723)
chr3 (5-69)||(25285843-25285907)
chr3 (98-166)||(35903690-35903758)
chr3 (151-201)||(17057157-17057207)
chr3 (11-69)||(28229414-28229472)
chr3 (13-71)||(48950613-48950671)
chr3 (1-77)||(566775-566852)
chr3 (124-217)||(3002074-3002167)
chr3 (1-70)||(29586340-29586409)
chr3 (1-41)||(33632855-33632895)
chr3 (7-71)||(33979937-33980001)
chr3 (97-133)||(44312401-44312437)
[»] scaffold0330 (2 HSPs)
scaffold0330 (103-231)||(13176-13304)
scaffold0330 (103-231)||(12523-12652)
[»] chr2 (38 HSPs)
chr2 (96-231)||(34173794-34173929)
chr2 (97-197)||(39063805-39063905)
chr2 (95-213)||(34172421-34172538)
chr2 (1-77)||(35316822-35316898)
chr2 (104-186)||(39064568-39064650)
chr2 (1-77)||(13238678-13238754)
chr2 (5-77)||(28564889-28564961)
chr2 (1-77)||(23259489-23259565)
chr2 (1-77)||(374990-375066)
chr2 (1-77)||(8988852-8988928)
chr2 (1-77)||(23459848-23459924)
chr2 (1-69)||(30709115-30709183)
chr2 (1-74)||(2063353-2063427)
chr2 (96-166)||(35029861-35029931)
chr2 (4-77)||(21454500-21454572)
chr2 (129-233)||(33513941-33514046)
chr2 (5-77)||(4446902-4446974)
chr2 (97-200)||(16870579-16870682)
chr2 (1-66)||(13780506-13780572)
chr2 (4-66)||(19905889-19905951)
chr2 (1-70)||(15709772-15709841)
chr2 (8-77)||(19908777-19908846)
chr2 (1-77)||(29188650-29188727)
chr2 (5-70)||(38397085-38397150)
chr2 (1-77)||(35315499-35315575)
chr2 (103-166)||(4855339-4855402)
chr2 (1-77)||(11864874-11864942)
chr2 (1-66)||(3594865-3594931)
chr2 (96-166)||(34228146-34228216)
chr2 (1-66)||(40254151-40254217)
chr2 (1-66)||(41435205-41435271)
chr2 (103-196)||(4854479-4854572)
chr2 (5-70)||(35315294-35315359)
chr2 (96-201)||(39062218-39062323)
chr2 (103-199)||(3467310-3467406)
chr2 (97-133)||(6205456-6205492)
chr2 (1-77)||(31618769-31618845)
chr2 (1-77)||(36758863-36758939)
[»] chr8 (34 HSPs)
chr8 (1-77)||(30426671-30426747)
chr8 (6-77)||(10672519-10672590)
chr8 (1-77)||(28069716-28069792)
chr8 (1-77)||(40695249-40695325)
chr8 (5-75)||(24102015-24102085)
chr8 (1-75)||(36991355-36991429)
chr8 (1-77)||(26749550-26749626)
chr8 (1-76)||(10652619-10652694)
chr8 (4-77)||(44859174-44859245)
chr8 (1-77)||(45113267-45113344)
chr8 (4-76)||(34612562-34612634)
chr8 (1-77)||(41511259-41511335)
chr8 (5-77)||(42761710-42761782)
chr8 (8-50)||(5033108-5033150)
chr8 (1-77)||(1937156-1937233)
chr8 (20-77)||(28318923-28318980)
chr8 (103-194)||(6461886-6461977)
chr8 (1-66)||(17867661-17867727)
chr8 (1-70)||(18689495-18689564)
chr8 (104-200)||(38444430-38444526)
chr8 (94-170)||(39309664-39309740)
chr8 (97-197)||(42578709-42578809)
chr8 (4-71)||(21486926-21486993)
chr8 (7-77)||(6399921-6399991)
chr8 (1-43)||(12177583-12177625)
chr8 (1-43)||(12422011-12422053)
chr8 (7-77)||(30796275-30796344)
chr8 (1-71)||(36748494-36748563)
chr8 (103-201)||(42503032-42503130)
chr8 (1-70)||(24557183-24557252)
chr8 (97-201)||(7870337-7870441)
chr8 (103-139)||(34587359-34587395)
chr8 (5-77)||(37966449-37966520)
chr8 (97-133)||(42503954-42503990)
[»] chr7 (38 HSPs)
chr7 (1-77)||(25084730-25084806)
chr7 (1-77)||(9559056-9559132)
chr7 (1-77)||(4888464-4888540)
chr7 (1-77)||(16366515-16366591)
chr7 (1-77)||(21151149-21151225)
chr7 (1-77)||(12139323-12139400)
chr7 (1-77)||(7362565-7362641)
chr7 (1-77)||(18198253-18198329)
chr7 (1-77)||(45260429-45260505)
chr7 (5-76)||(32915954-32916025)
chr7 (1-77)||(44647959-44648037)
chr7 (1-77)||(33450503-33450580)
chr7 (1-77)||(47500284-47500361)
chr7 (1-77)||(39855815-39855891)
chr7 (1-77)||(47799902-47799978)
chr7 (1-77)||(34985947-34986024)
chr7 (1-77)||(47226078-47226152)
chr7 (4-71)||(46802336-46802403)
chr7 (1-71)||(989132-989202)
chr7 (103-250)||(41347097-41347245)
chr7 (1-66)||(19027685-19027751)
chr7 (1-66)||(20726885-20726951)
chr7 (7-77)||(30588532-30588602)
chr7 (90-203)||(18947279-18947392)
chr7 (1-76)||(28528549-28528624)
chr7 (1-66)||(14696759-14696825)
chr7 (7-77)||(19889042-19889112)
chr7 (97-162)||(16980471-16980536)
chr7 (103-196)||(25675716-25675809)
chr7 (103-203)||(18948216-18948316)
chr7 (7-71)||(29631051-29631115)
chr7 (1-49)||(29844316-29844364)
chr7 (1-66)||(30102501-30102567)
chr7 (7-77)||(32916166-32916236)
chr7 (1-59)||(35737128-35737186)
chr7 (1-69)||(47080433-47080502)
chr7 (7-71)||(676030-676094)
chr7 (19-71)||(23142567-23142619)
[»] chr6 (22 HSPs)
chr6 (1-77)||(4804445-4804521)
chr6 (4-77)||(27826535-27826608)
chr6 (1-77)||(21159371-21159447)
chr6 (1-77)||(7162081-7162157)
chr6 (1-77)||(12412634-12412710)
chr6 (1-77)||(13089751-13089827)
chr6 (1-77)||(17944159-17944235)
chr6 (1-77)||(1249150-1249224)
chr6 (1-77)||(24484876-24484952)
chr6 (17-77)||(29698160-29698220)
chr6 (1-77)||(227565-227642)
chr6 (1-70)||(7215854-7215923)
chr6 (1-77)||(2800613-2800689)
chr6 (1-77)||(13888524-13888601)
chr6 (1-77)||(32254033-32254109)
chr6 (1-77)||(2142295-2142371)
chr6 (1-34)||(32737897-32737930)
chr6 (36-71)||(2720376-2720411)
chr6 (1-66)||(7098197-7098263)
chr6 (1-66)||(7545645-7545711)
chr6 (5-71)||(12734413-12734478)
chr6 (1-70)||(17828570-17828639)
[»] chr5 (40 HSPs)
chr5 (1-77)||(4895737-4895813)
chr5 (1-77)||(35660611-35660687)
chr5 (1-77)||(11775790-11775866)
chr5 (1-77)||(14349800-14349876)
chr5 (1-77)||(18625423-18625499)
chr5 (1-77)||(32129619-32129695)
chr5 (1-77)||(37266728-37266804)
chr5 (1-77)||(34827189-34827265)
chr5 (1-77)||(40753164-40753240)
chr5 (1-77)||(13032115-13032191)
chr5 (130-231)||(19778695-19778797)
chr5 (16-77)||(4592797-4592858)
chr5 (1-77)||(3057156-3057232)
chr5 (1-77)||(36290599-36290675)
chr5 (1-77)||(39902412-39902488)
chr5 (1-67)||(27428883-27428949)
chr5 (1-70)||(29340999-29341068)
chr5 (9-77)||(8440981-8441049)
chr5 (3-71)||(3057419-3057487)
chr5 (1-77)||(41660103-41660179)
chr5 (31-77)||(28142807-28142853)
chr5 (1-77)||(2984392-2984468)
chr5 (7-71)||(43222129-43222193)
chr5 (1-69)||(43309113-43309181)
chr5 (97-200)||(33530665-33530768)
chr5 (5-71)||(18653364-18653430)
chr5 (1-77)||(3041309-3041386)
chr5 (377-446)||(19912553-19912622)
chr5 (4-77)||(32793371-32793444)
chr5 (149-216)||(1222309-1222376)
chr5 (3-77)||(10362018-10362092)
chr5 (151-201)||(43378626-43378676)
chr5 (151-201)||(43379449-43379499)
chr5 (103-196)||(120079-120172)
chr5 (151-216)||(1217846-1217911)
chr5 (4-77)||(17247403-17247476)
chr5 (1-70)||(31653039-31653108)
chr5 (5-71)||(32316509-32316571)
chr5 (7-71)||(9465746-9465810)
chr5 (129-169)||(37839994-37840034)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-77)||(16399-16475)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-77)||(208060-208136)
[»] chr1 (32 HSPs)
chr1 (1-77)||(12151764-12151840)
chr1 (1-77)||(50294065-50294141)
chr1 (13-77)||(12380924-12380988)
chr1 (13-77)||(12384991-12385055)
chr1 (1-77)||(50484383-50484459)
chr1 (1-77)||(23861954-23862033)
chr1 (4-77)||(24977237-24977310)
chr1 (1-77)||(48327156-48327231)
chr1 (1-77)||(30077646-30077722)
chr1 (1-77)||(39426207-39426283)
chr1 (1-77)||(52280041-52280117)
chr1 (6-77)||(40328275-40328345)
chr1 (1-69)||(32361309-32361377)
chr1 (1-71)||(18976306-18976377)
chr1 (8-71)||(24413291-24413354)
chr1 (129-214)||(1765194-1765279)
chr1 (97-197)||(7338767-7338867)
chr1 (5-77)||(26860056-26860128)
chr1 (4-71)||(32887785-32887852)
chr1 (1-71)||(5047383-5047453)
chr1 (1-59)||(7840681-7840739)
chr1 (1-66)||(6948832-6948899)
chr1 (19-70)||(7844992-7845043)
chr1 (32-71)||(23916089-23916128)
chr1 (1-66)||(18107323-18107389)
chr1 (31-77)||(46608409-46608455)
chr1 (97-170)||(15668275-15668348)
chr1 (1-34)||(45978045-45978078)
chr1 (1-29)||(12380879-12380907)
chr1 (1-29)||(12384946-12384974)
chr1 (5-77)||(26372249-26372321)
chr1 (4-76)||(33441531-33441603)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-77)||(7144-7220)
[»] scaffold0126 (1 HSPs)
scaffold0126 (7-77)||(22450-22520)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-74)||(9203-9276)
[»] scaffold0171 (1 HSPs)
scaffold0171 (4-77)||(17311-17384)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-77)||(6437-6513)
[»] scaffold0664 (1 HSPs)
scaffold0664 (1-66)||(4702-4768)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-70)||(58684-58753)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 31414918 - 31414761
Alignment:
Q  95 tggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaa 194  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||||    
T  31414918 tggagtccatctttgctccatttaagtttcctcaatttattccttttcactttattgatatgtgacatgtggcaaatgtaaaaagaagggttgagattaa 31414819  T
Q  195 aaggtttagcatgaacacttttt-aaagaaaaataaaaca-cgctatcttcttctttc 250  Q
    ||| ||| |||||| |||||||| || ||||| ||||||| |||| ||||||||||||    
T  31414818 aagctttggcatgagcactttttcaatgaaaagtaaaacaccgctctcttcttctttc 31414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19901920 - 19901996
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  19901920 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 19901996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5763164 - 5763240
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5763164 ttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 5763240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 34778490 - 34778418
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  34778490 agagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatatttta 34778418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 56558352 - 56558276
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  56558352 ttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtcccaccatcattaattatatttta 56558276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3952172 - 3952248
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  3952172 ttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctcaccatcattaattatatttta 3952248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23610715 - 23610639
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||||||||    
T  23610715 ttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaaatatatttta 23610639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 18207045 - 18207118
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  18207045 gagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattatatttta 18207118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 33262557 - 33262630
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||    
T  33262557 gagagagatagacacaaaaaatagatggtggatcctaccactaaataggtcccaccatcattaattatatttta 33262630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5416468 - 5416543
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  5416468 ttggagagagatagacacaaaaa-tagattgtgggtcctaccactaagtgggtcccaccatcattaattatatttta 5416543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24073689 - 24073617
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatat 73  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  24073689 ttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccgccatcattaattatat 24073617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 30567970 - 30567898
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||    
T  30567970 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaattatatttta 30567898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 56269078 - 56269153
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  56269078 ttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttttt 56269153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12312477 - 12312554
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  12312477 ttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtgggtcccatcatcattaattatatttta 12312554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 39862587 - 39862514
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||||||||||||||||||||    
T  39862587 gagagagatagacacaaaaaatagatggtgtgtcctatcactaaatgagttccaccatcattaattatatttta 39862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33247132 - 33247208
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||| || || |||||||||||||||||||||||    
T  33247132 ttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggttccaccatcattaattatatttta 33247208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 38079725 - 38079798
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||||||  | |||||||||||||||||||||||    
T  38079725 gagagagatagacacaagaaatagatggtgggtcctactactaagtggattccaccatcattaattatatttta 38079798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 56453822 - 56453898
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||| |||||| ||||| || |||||| |||||||||||||| ||||| |||||    
T  56453822 ttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatttttta 56453898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5524520 - 5524444
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| ||||||||  |||||| ||||| || |||||| |||||||||||||||||||| |||||    
T  5524520 ttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaattatttttta 5524444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 37002253 - 37002329
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||| ||||||||||||||||||||  |||||| |||||  |||||||| |||||||||||||||||||| |||||    
T  37002253 ttggaaagagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattatttttta 37002329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1871350 - 1871280
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||||| |||| |||||| |||| |||||| |||||||| |||||| |||||||||||||    
T  1871350 ttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatcattaattat 1871280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36688190 - 36688260
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||||||||||||||  || ||  ||||| ||||||||| ||||||||||||||||||||    
T  36688190 ttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaattat 36688260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23474184 - 23474115
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    |||| |||||||||||||| |||||||||||||| |||||| | | ||||| ||||||||||||||||||    
T  23474184 ttggggagagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccatcattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47922368 - 47922445
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||||| |||||| ||||  ||||||| |||||    
T  47922368 ttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcccatcatctataattatttttta 47922445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 31862246 - 31862298
Alignment:
Q  25 tagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  31862246 tagatggtggatcctaccactaagtgggtcccaccatcattaattatttttta 31862298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42010190 - 42010114
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| ||||||||||  ||| || ||||| |||||| || |||||||||||||||||||| |||||    
T  42010190 ttggagagagatagatacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttttta 42010114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 47922085 - 47922153
Alignment:
Q  9 agatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||| ||||||||||||||| |||| || |||||||||||| || ||||||||||||| |||||||||    
T  47922085 agataaacacaaaaaatagatagtgggtcttaccactaagtgggttccaccatcattaaatatatttta 47922153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 12241440 - 12241486
Alignment:
Q  31 gtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  12241440 gtgggtcctaccactaagtgggtcccaccatcattaattatatttta 12241486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 1015859 - 1015931
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    |||||||||||||||||||||||  |||||| ||| | || || ||| |||||||||||||||||||| ||||    
T  1015859 gagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggtcccaccatcattaattatttttt 1015931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 39310396 - 39310496
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||| | ||||||||||||| || |||||  || | ||||| |||||||||| |||  ||||| ||| || |||||||||||    
T  39310396 gagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggctgagattaaaa 39310495  T
Q  197 g 197  Q
    |    
T  39310496 g 39310496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 24484784 - 24484883
Alignment:
Q  98 agtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaag 197  Q
    |||| |||||||||||||||| | ||||||||||||| |  |||||  || | |||||||||||||||| |||  ||||| ||| || ||||||||||||    
T  24484784 agtccatctttgctccatttaagattcctcaatttatcctatttcaagttatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaag 24484883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 34927555 - 34927488
Alignment:
Q  5 agagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||||| |||||||||||| |||||||| |||||  ||| || |||||||||||||    
T  34927555 agagagatagacacaaaagaatagatggtgggtcctaccattaagtatgtctcatcatcattaattat 34927488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 13493342 - 13493276
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    |||||||||||||||  ||||||||| |||| ||| |||||||||||||||||   |||||||||||    
T  13493342 gagagagatagacacgtaaaatagatagtggatcccaccactaagtgagtccctttatcattaatta 13493276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 48084533 - 48084603
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||| |||| |||  |||||| | ||| ||||||||| |||||||||||||||||||| |||||    
T  48084533 agagatagacataaaacataagtggtgggttctagcactaagtgggtcccaccatcattaattatttttta 48084603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 32158805 - 32158906
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatg-taaaaacaacggttgagattaaaaggttt 201  Q
    |||| ||||||||||||||||||||||||||  || ||||| |   | |||||||||||||| ||||| | ||||| ||| ||  |||||||||||||||    
T  32158805 atctctgctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtagcaaaagttaaaaccaagggcagagattaaaaggttt 32158904  T
Q  202 ag 203  Q
    ||    
T  32158905 ag 32158906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 25219070 - 25219003
Alignment:
Q  1 ttggagagagatagacacaaaaaataga--tggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||||||||| | |  |||||| ||||| |||||||||  ||||||||||||||    
T  25219070 ttggagagagatagacacaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 25219003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 40215455 - 40215515
Alignment:
Q  9 agatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    ||||| ||| ||||| |||||  ||| |||||||||| |||||||||||||||||||||||    
T  40215455 agatacacataaaaattagattatggatcctaccacttagtgagtcccaccatcattaatt 40215515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 26429042 - 26428971
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||| |||||||||||||| |||||||||||  |||||||||| | || ||| || |||||||||||||    
T  26429042 ttggagaaagatagacacaaaagaatagatggtgagtcctaccactgaatgggtctcatcatcattaattat 26428971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 32159584 - 32159521
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 166  Q
    |||||||||||||||||||||||||||||||  || ||||| |   | ||||||||||||||||    
T  32159584 atctttgctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtgg 32159521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 44095310 - 44095377
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 170  Q
    ||||||||||||||| | ||||||| ||||| ||||||||| | ||  ||||||||||||||| ||||    
T  44095310 atctttgctccattttgatttcctccatttactccttttcaatgtgcagatgtgtgacatgtgtcaaa 44095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12153227 - 12153185
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctacca 43  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||    
T  12153227 ttggagagagatagacacaaaaattagatggtgggtcccacca 12153185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17493076 - 17493010
Alignment:
Q  1 ttggagagagatagacacaa-aaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||||| ||||||  |||||| ||||| |||||||||  | ||||||||||||    
T  17493076 ttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggattccaccatcatta 17493010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 25442190 - 25442252
Alignment:
Q  15 acacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| |||| |||||||||||||||  || ||||  |||||||||| |||||    
T  25442190 acacaaaaaatagattgtgggtcctaccactaagtggatctcaccgacattaattatttttta 25442252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32146576 - 32146510
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||| |||||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  32146576 ttggagagagatagatacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 32146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 46239036 - 46238974
Alignment:
Q  5 agagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  46239036 agagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 46238974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 53526162 - 53526096
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||||| |||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  53526162 ttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 53526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 55160372 - 55160438
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||| |||||||||||||||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  55160372 ttggaaagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 55160438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 5470032 - 5469963
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 166  Q
    ||||| |||||||||||||||| |||| |||||||||| || |||  | || | ||||||||||||||||    
T  5470032 gagtccatctttgctccatttaagtttgctcaatttatcccatttaccattatggatgtgtgacatgtgg 5469963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 44516785 - 44516821
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaattta 133  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  44516785 gagtctatctttgatccatttaggtttccttaattta 44516821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 37886654 - 37886788
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||| ||||||||    
T  37886654 gagtccatttttgcttcatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatgtaaagtcaagggttgggattaaaa 37886753  T
Q  197 ggtttagcatgaacactttttaaagaaaaataaaa 231  Q
    | ||| |||||| |||||||||| |||||||||||    
T  37886754 gctttggcatgagcactttttaatgaaaaataaaa 37886788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 27033724 - 27033648
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  27033724 ttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccatcattaattatatttta 27033648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34373904 - 34373828
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||    
T  34373904 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtcccaccatcattaattatatttta 34373828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 43719949 - 43720025
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  43719949 ttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccatcattaattatatttta 43720025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 34373593 - 34373663
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  34373593 agagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 34373663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 55444653 - 55444512
Alignment:
Q  93 tatggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagatt 192  Q
    ||||||||| ||||||||| |||||| |  | ||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || ||||    
T  55444653 tatggagtccatctttgcttcatttaagaatgctccatttatcccttttcactttattgatgtgtgacatgtggcaaatgtaaaaacaagggctgggatt 55444554  T
Q  193 aaaaggtttagcatgaacactt-tttaaagaaaaataaaaca 233  Q
    | ||  | || ||| ||||||| ||||| |||||||||||||    
T  55444553 agaatctctatcataaacacttgtttaatgaaaaataaaaca 55444512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2230056 - 2229980
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||  | |||||||||||||||||||||||    
T  2230056 ttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggtttccaccatcattaattatatttta 2229980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19830433 - 19830509
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||| |||| |||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  19830433 ttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattatatttta 19830509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12403039 - 12402963
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| | ||||| |||||||||| | |||||||||||||||||||||||| |||||||||||||||    
T  12403039 ttggagagagatagatataaaaattagatggtggattctaccactaagtgagtcccaccattattaattatatttta 12402963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 46167466 - 46167390
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||  ||| ||||| |||||||||||||||    
T  46167466 ttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtggatcctaccattattaattatatttta 46167390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31523670 - 31523746
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| |||||  |||||||| |||||||||||||||||||| |||||    
T  31523670 ttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttttta 31523746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 48084893 - 48084816
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||| ||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||    
T  48084893 ttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 48084816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 40613862 - 40613714
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 202  Q
    |||||||||||||||||    |||| |||||| ||| |||| ||||| ||||| |||||||||||| || | ||| ||| || ||| ||||| |||||||    
T  40613862 atctttgctccatttagcaagcctccatttatccctgttcattttgtagatgtctgacatgtggcacatattaaatcaagggctgaaattaacaggttta 40613763  T
Q  203 gcatgaacactt-tttaaagaaaaataaaacacgctatcttcttctttc 250  Q
     ||| ||||||| ||||| |||||||||||||| || | ||||||||||    
T  40613762 acataaacacttgtttaatgaaaaataaaacacactcttttcttctttc 40613714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 42613149 - 42613077
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| ||||||||  |||||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  42613149 agagagatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttttta 42613077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49679272 - 49679348
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  ||| || ||||| |||||| || |||||||||||||||||||| |||||    
T  49679272 ttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttttta 49679348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40851847 - 40851781
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaa 67  Q
    ||||||| |||||||||||||||||||||||||| | | ||||||||||| |||| |||||||||||    
T  40851847 ttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtcctaccatcattaa 40851781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 550818 - 550894
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||| ||||| | |||||||||||||||||| ||||| || |||||| |||||||||| |||| ||||||||||    
T  550818 ttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtgggtcccaccattattatttatatttta 550894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24754730 - 24754673
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccac 58  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||||||| |||||||    
T  24754730 ttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtcccac 24754673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24763727 - 24763670
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccac 58  Q
    ||||||||||||||||||| ||||||||||||   ||||||||||||||| |||||||    
T  24763727 ttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtcccac 24763670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40810357 - 40810434
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| ||| |||| |||||||||||| ||  ||||||||||| |||||| ||||||||||||| |||||    
T  40810357 ttggagagagataaacaaaaaagaatagatggtgggtctaaccactaagtgggtcccatcatcattaattatttttta 40810434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 1995513 - 1995441
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| | |||||||||  ||  |||||||| |||||||||| |||||||||||||||| |||||    
T  1995513 agagagatagacatagaaaatagataatgagtcctaccaataagtgagtctcaccatcattaattatttttta 1995441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 44311393 - 44311439
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttca 143  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  44311393 gagtctatctttgctctatttatgtttcctcaatttattccatttca 44311439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 55439871 - 55439993
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 202  Q
    |||||||||||||||| |  | ||  |||||| |||||||||||| |||||||||||||| |||||| | || || ||| ||||||||||  ||| ||||    
T  55439871 atctttgctccatttaagaatgcttcatttatcccttttcactttattgatgtgtgacatatggcaagtatacaatcaagggttgagattgcaagattta 55439970  T
Q  203 gcatgaacactttttaaagaaaa 225  Q
     ||| | ||||||| || |||||    
T  55439971 acataagcacttttcaatgaaaa 55439993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 40809579 - 40809652
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 170  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||| |  |  | ||||||||||| ||||||||    
T  40809579 gagtgtatctttgctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggcaaa 40809652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 54911723 - 54911658
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||| ||| ||||||| | |||| |||||||| ||| ||||| ||||||||||||||||    
T  54911723 agagagatagagacataaaataggtagtgggtcctaccattaaatgagttccaccatcattaatta 54911658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 25285843 - 25285907
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    ||||||||||||||| ||||||||| |||| ||||| || ||| |||| ||||||||||| ||||    
T  25285843 agagagatagacacataaaatagatagtggatcctatcattaaatgagacccaccatcatcaatt 25285907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 35903690 - 35903758
Alignment:
Q  98 agtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 166  Q
    |||||||||||||||||||||||||  |||||||||  || |||||  || | ||||||||||||||||    
T  35903690 agtctatctttgctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 17057157 - 17057207
Alignment:
Q  151 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 201  Q
    ||||||||||| ||||||||  | ||| |||||||||||||||||||||||    
T  17057157 gatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggttt 17057207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 28229414 - 28229472
Alignment:
Q  11 atagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    ||||||||||||||||| |||||  ||||| || ||| |||||| ||||||||||||||    
T  28229414 atagacacaaaaaataggtggtgagtcctatcattaaatgagtctcaccatcattaatt 28229472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 48950671 - 48950613
Alignment:
Q  13 agacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||| ||||||| |||||| ||||| || ||| |||||| ||||||||||||||||    
T  48950671 agacacataaaataggtggtggatcctatcattaaatgagtctcaccatcattaattat 48950613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 566775 - 566852
Alignment:
Q  1 ttggagagagatagacac-aaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| || |||||||| |||| || ||||| || |||||| |||||||| | |||| ||||||||||    
T  566775 ttggagagagatagatacaaaaaaatatatggcggatcctatcattaagtgggtcccacctttattatttatatttta 566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 3002074 - 3002167
Alignment:
Q  124 cctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacacttttt 217  Q
    |||| |||||| |||||||| ||  ||||||||||| || |||||||||| ||| ||| || |  ||||||||| | |||||| ||||||||||    
T  3002074 cctccatttatcccttttcatttcattgatgtgtgatatttggcaaatgttaaatcaagggctaggattaaaagctctagcataaacacttttt 3002167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29586409 - 29586340
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||||||||| ||||||||| ||   || ||| | |||||| ||| |||||||||||||||    
T  29586409 ttggagagagatagacacataaaatagatagtaagtcttactattaagtgggtctcaccatcattaatta 29586340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33632895 - 33632855
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctac 41  Q
    ||||||||||||||||||| ||||||||| |||| ||||||    
T  33632895 ttggagagagatagacacataaaatagatagtggatcctac 33632855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 33980001 - 33979937
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||||||| ||||||  ||||| || ||| | |||| ||| ||||||||||||    
T  33980001 agagatagacacaaaaaataaatggtgaatcctatcattaaataagtctcactatcattaattat 33979937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 44312437 - 44312401
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaattta 133  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaattta 44312401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 13304 - 13176
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||| ||||| ||||||||| |||     
T  13304 atctttgctccatttaggtttcctcaatttattccttttcactttattgatgtgtgacatgtggcaaatttaaagtcaagggttgggattaaaagctttg 13205  T
Q  203 gcatgaacactttttaaagaaaaataaaa 231  Q
    |||| | |||||||||| |||||||||||    
T  13204 gcattagcactttttaatgaaaaataaaa 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 12523 - 12652
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 202  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||     
T  12523 atctttgctctatttaagtttcctcaatttattccttttcactttattgttgtgtgacatgtggcaaatgtaaaaacaagggttgggattaaaagctttg 12622  T
Q  203 gcatgaacac-tttttaaagaaaaataaaa 231  Q
    |||||| ||| ||||||| |||||||||||    
T  12623 gcatgagcacttttttaatgaaaaataaaa 12652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 96 - 231
Target Start/End: Complemental strand, 34173929 - 34173794
Alignment:
Q  96 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaa 195  Q
    |||||| ||||||||||| ||| ||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||||||||||    
T  34173929 ggagtccatctttgctcccttttggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaacaatggttgagattaaa 34173830  T
Q  196 aggtttagcatgaacactttttaaagaaaaataaaa 231  Q
    || | | || ||||||||||||||  ||||||||||    
T  34173829 agctatggcgtgaacactttttaataaaaaataaaa 34173794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 39063805 - 39063905
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  39063805 gagtccatctttgctccatttaggtttcctcaatttattcattttcactttattgatgtatgacatgtggcaaatgtaaaaacaatggttgggattaaaa 39063904  T
Q  197 g 197  Q
    |    
T  39063905 g 39063905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 34172421 - 34172538
Alignment:
Q  95 tggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaa 194  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| || ||||||||||||    
T  34172421 tggagtcaatcttttctccatttaggttttctcaatttattccttttcattttattgatgtgtgacatgtgacaaatgtaaaaataagggttgagattaa 34172520  T
Q  195 aaggtttagcatgaacact 213  Q
    ||| ||| |||||||||||    
T  34172521 aagcttt-gcatgaacact 34172538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35316898 - 35316822
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35316898 ttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattatatttta 35316822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 39064650 - 39064568
Alignment:
Q  104 tctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggtt 186  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  39064650 tctttgctccatttatgtttcctcaatttattccttttcattttattgatgtgtgacatgtggcaaatgtaaaaacaagggtt 39064568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13238754 - 13238678
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||    
T  13238754 ttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcccaccatcattaattatatttta 13238678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 28564961 - 28564889
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  28564961 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 28564889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23259489 - 23259565
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||  |||||||||||||||||||||||||    
T  23259489 ttggagagagatagacacaaaaaatagctggtgggtcctactactaagtggatcccaccatcattaattatatttta 23259565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 375066 - 374990
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| |||||  |||||||| |||||||||||||||||||| |||||    
T  375066 ttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttttta 374990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8988928 - 8988852
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  || | | ||||| ||||||||| |||||||||||||||||||| |||||    
T  8988928 ttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaattatttttta 8988852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23459848 - 23459924
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  ||| || ||||| |||||| || |||||||||||||||||||| |||||    
T  23459848 ttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttttta 23459924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30709183 - 30709115
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    ||||||||||||||||||| |||||||||  ||| |||||||||||||||  |||||||||||||||||    
T  30709183 ttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaatt 30709115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2063427 - 2063353
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatgg-tggctcctaccactaagtgagtcccaccatcattaattatatt 74  Q
    ||||||||||||||||||||||||||||||| | | ||||||||| ||||| || |||||||||||||| |||||    
T  2063427 ttggagagagatagacacaaaaaatagatggtttggtcctaccaccaagtgggttccaccatcattaataatatt 2063353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 35029931 - 35029861
Alignment:
Q  96 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 166  Q
    ||||||||||||||||||||||||||||||||||||||  || |||||  |  | ||||||||||||||||    
T  35029931 ggagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 21454500 - 21454572
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| ||||| |||| || ||||| |||||| || ||||||||||||||||| |||||    
T  21454500 gagagagatagacacaaaaa-tagattgtgggtcataccattaagtgggttccaccatcattaattatttttta 21454572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 33514046 - 33513941
Alignment:
Q  129 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt-taaagaaaaat 227  Q
    |||||| |||||||||||  ||||||| |||||| || |||||| |||| ||| ||||||||||||||| | |||||| | ||||||| | | |||||||    
T  33514046 atttatcccttttcacttcattgatgtatgacatttgacaaatgaaaaatcaagggttgagattaaaagttgtagcataatcacttttctgatgaaaaat 33513947  T
Q  228 aaaaca 233  Q
    ||||||    
T  33513946 aaaaca 33513941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 4446902 - 4446974
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| ||||||||| |||| |||||||||||| || ||  ||| |||||||||||| |||||    
T  4446902 agagagatagacacataaaatagatagtggatcctaccactaattgggtttcactatcattaattatttttta 4446974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 16870579 - 16870682
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||| |   | |||||||||||  | | |||  ||||  ||| ||||||||||||||    
T  16870579 gagtcaatctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 16870678  T
Q  197 ggtt 200  Q
    ||||    
T  16870679 ggtt 16870682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13780572 - 13780506
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||||||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  13780572 ttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 13780506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 19905951 - 19905889
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||| ||||||||||||||  | ||  | ||||||||||||||||||||||    
T  19905951 gagagagatagacacataaaatagatggtgggacatattattaagtgagtcccaccatcatta 19905889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15709841 - 15709772
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||| ||| | ||||||||| |||| |||||||| |||||| || ||| ||||||||||||    
T  15709841 ttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 15709772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 19908846 - 19908777
Alignment:
Q  8 gagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||| ||||||||| |||  ||||||   |||||| |||||||||||||||||||| |||||    
T  19908846 gagatagacacataaaatagatagtgagtcctacttttaagtgggtcccaccatcattaattatttttta 19908777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 29188727 - 29188650
Alignment:
Q  1 ttggagagagatagacacaaaaaataga-tggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||   | |||||  ||||| ||||||| | |||||||||||||||||||| |||||    
T  29188727 ttggagagagatagacacaaaaaaacaagtggtgcgtcctatcactaagcgggtcccaccatcattaattatttttta 29188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 38397150 - 38397085
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||| | ||||||||| |||| | |||| | ||||||||||||||||||| ||||||    
T  38397150 agagagatagacaaataaaatagatagtgggtgctactattaagtgagtcccaccatcaataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 35315575 - 35315499
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| ||||||| ||||| |||||| ||||| || |||||||||||  ||||| |||| ||| |||||    
T  35315575 ttggagagagataaacacaaacaataggtggtgggtcctatcattaagtgagtccttccatcgttaactatttttta 35315499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 4855402 - 4855339
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 166  Q
    |||||||||||||||| |||| ||||||||| ||||||||| | | | ||||||||||| ||||    
T  4855402 atctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtgg 4855339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11864942 - 11864874
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||||        ||||||||| |||||| |||||||||  |||||||||||    
T  11864942 ttggagagagatagacacaaaaaatagatg--------taccactaaatgagtctcaccatcatggattatatttta 11864874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3594931 - 3594865
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||||| |||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  3594931 ttggagagagatagacaaaaaaaaataagtggtggatcctatcactaagtggatcccaccatcatta 3594865  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 34228146 - 34228216
Alignment:
Q  96 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtgg 166  Q
    |||||| |||||||||||||||| | ||||||||||||  || |||||  || | ||||||||||||||||    
T  34228146 ggagtccatctttgctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40254151 - 40254217
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||| ||||||||||||||||| ||||  |||||| ||||| |||||||||  ||||||||||||||    
T  40254151 ttggggagagatagacacaaaataataagtggtgggtcctatcactaagtggatcccaccatcatta 40254217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41435205 - 41435271
Alignment:
Q  1 ttggagagagatagacac-aaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||| ||||||||  |||||| ||||| |||||||||  ||||||||| ||||    
T  41435205 ttggagagagatagacacaaaaaaataagtggtggatcctatcactaagtggatcccaccattatta 41435271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 4854479 - 4854572
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    |||||||||||||||| |||  ||| ||||| ||||||||| | | | |||||||||||| ||| |||  ||||  ||| ||||||||||||||    
T  4854479 atctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgacatatggtaaaaataaattcaatggttgagattaaaa 4854572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 35315294 - 35315359
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||||| |||||||||  ||| || ||| | ||| ||||||||||||| ||||||||    
T  35315294 agagagatagacacataaaatagataatggatcttactattaattgagtcccaccattattaatta 35315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 201
Target Start/End: Original strand, 39062218 - 39062323
Alignment:
Q  96 ggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaa 195  Q
    ||||| |||||||||||||||| |||||  ||||||||| || |||||  |  | ||||| ||||||||||||||  |||||  || | ||| |||||||    
T  39062218 ggagtttatctttgctccattttggtttgttcaatttatcccatttcaagtcatagatgtatgacatgtggcaaaaataaaatgaatgtttgtgattaaa 39062317  T
Q  196 aggttt 201  Q
    ||||||    
T  39062318 aggttt 39062323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 3467406 - 3467310
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggt 199  Q
    ||||||||||||||| |  || ||| ||||| ||||||| ||||  | |||||||||||| |||||||  ||||   || |||||||||||||||||    
T  3467406 atctttgctccattttgacttgctccatttactcctttttacttcatagatgtgtgacatatggcaaaactaaatctaagggttgagattaaaaggt 3467310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 6205492 - 6205456
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaattta 133  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  6205492 gagtccatctttgctccatttaggcttcctcaattta 6205456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31618769 - 31618845
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||| ||||||| | | ||||||||| |||  || || || |||||||||||||| |||||||||||| |||||    
T  31618769 ttggagaaagatagatatataaaatagatagtgagtcatatcattaagtgagtcccacaatcattaattatttttta 31618845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36758863 - 36758939
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||| ||  |||||| ||||| |  || ||| || |||| |||||||||||| |||||    
T  36758863 ttggagagagatagacacaaaaagtaagtggtggatcctatctttaggtgggttccacaatcattaattatttttta 36758939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30426671 - 30426747
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  30426671 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 30426747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 10672519 - 10672590
Alignment:
Q  6 gagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10672519 gagagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattatatttta 10672590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28069792 - 28069716
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  28069792 ttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 28069716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40695249 - 40695325
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||||||||    
T  40695249 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtgagttccaccatcattagttatatttta 40695325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 24102085 - 24102015
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatattt 75  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  24102085 agagagatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaattatattt 24102015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 36991429 - 36991355
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatattt 75  Q
    ||||||||||||||||| || ||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  36991429 ttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtcccaccatcattaattatattt 36991355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26749550 - 26749626
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  || ||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  26749550 ttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttttta 26749626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10652619 - 10652694
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    ||||||||||||||| ||||||||| |||||||| || ||| ||||| || |||||||||||||||||||||||||    
T  10652619 ttggagagagatagatacaaaaaattgatggtgggtcatactactaattgggtcccaccatcattaattatatttt 10652694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 44859174 - 44859245
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||   ||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  44859174 gagagagatagact--aaaaatagatggtgggttctaccactaagtgggtcccaccatcattaattatatttta 44859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45113344 - 45113267
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||| |||||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||    
T  45113344 ttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgtcccatcatcattaattatttttta 45113267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 34612634 - 34612562
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    |||||||||||||||||||||||  |||||| ||||| ||||||||| ||| |||||||||||||||| ||||    
T  34612634 gagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaattatttttt 34612562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41511335 - 41511259
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||| ||||||||| | ||||||||||| |||| ||||| |||||||||  | |||||||||||||||||||||||    
T  41511335 ttggaaagagatagatataaaaaatagatagtgggtcctatcactaagtggtttccaccatcattaattatatttta 41511259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 42761782 - 42761710
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| ||||||||| |||| |||||||||| |||| || ||| ||||||||||||| |||||    
T  42761782 agagagatagacacataaaatagatagtggatcctaccactcagtgggttccatcatcattaattatttttta 42761710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 5033150 - 5033108
Alignment:
Q  8 gagatagacacaaaaaatagatggtggctcctaccactaagtg 50  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  5033150 gagatagacacaaaaaatagatggtgggtcctaccactaagtg 5033108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1937156 - 1937233
Alignment:
Q  1 ttggagagagatagacacaaaaaataga-tggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||   | |||||| ||||| ||||||| | |||||||||||||||||||| |||||    
T  1937156 ttggagagagatagacacaaaaaaacaagtggtgggtcctatcactaagcgggtcccaccatcattaattatttttta 1937233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 28318923 - 28318980
Alignment:
Q  20 aaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||| |||| |||| ||||||||||||||| |||| |||||||||||||||||||||    
T  28318923 aaaaaaagatagtgggtcctaccactaagtgggtccaaccatcattaattatatttta 28318980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 6461886 - 6461977
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaa 194  Q
    ||||||||||||||| ||||| ||||||||||| | |||||  || | ||||| ||||||||||||||  ||||| ||| ||||| ||||||    
T  6461886 atctttgctccatttcggtttgctcaatttatttcatttcaagttatagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaa 6461977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17867661 - 17867727
Alignment:
Q  1 ttggagagagatagacac-aaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||| ||||||||  |||||| ||||| |||||||||  ||||||||||||||    
T  17867661 ttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 17867727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18689564 - 18689495
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||| ||| | ||||||||| |||| |||||||| |||||| || ||| ||||||||||||    
T  18689564 ttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 18689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 38444526 - 38444430
Alignment:
Q  104 tctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtt 200  Q
    |||| ||||||||||| |||||||||||||  |  |||||  || | |||||||||||||||| ||| || ||| ||| ||||| ||||||||||||    
T  38444526 tcttagctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtggaaaaagttaaatcaagggttgtgattaaaaggtt 38444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 39309740 - 39309664
Alignment:
Q  94 atggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 170  Q
    |||||||||||||||||||||||||||   |||| |||||| ||||||||| |  | ||||  ||||||||||||||    
T  39309740 atggagtctatctttgctccatttaggaaacctccatttatcccttttcacctcatagatgattgacatgtggcaaa 39309664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 42578709 - 42578809
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||| |||| |||||||||  || |||||  |  | ||||| ||||||||||||||  ||||| ||| || |||||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  197 g 197  Q
    |    
T  42578809 g 42578809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 21486993 - 21486926
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||| || | |||||||| || |||| | |||| | |||||||||||||||||||||||||||    
T  21486993 gagagagatggatataaaaaatatatagtgggttctactattaagtgagtcccaccatcattaattat 21486926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 6399991 - 6399921
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||| || ||  || |||||  |||||  |||||||||||| |||||    
T  6399991 agagatagacacaaaaaatagatggtgggtcttattaccaagtggatcccattatcattaattatttttta 6399921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12177583 - 12177625
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctacca 43  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||    
T  12177583 ttggagagagatagatacaaaaaatagatggtggatcccacca 12177625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12422011 - 12422053
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctacca 43  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||    
T  12422011 ttggagagagatagatacaaaaaatagatggtggatcccacca 12422053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 30796344 - 30796275
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||| | ||||||| |||| || || || ||||||||| |||||||||||||||||||| |||||    
T  30796344 agagatagacgctaaaaataaatggcgggtc-tatcactaagtgggtcccaccatcattaattatttttta 30796275  T

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Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36748494 - 36748563
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||| ||||||||||||||| ||||  | || |||||||| ||||||  |||||||||||||||||||    
T  36748494 ttggagatagatagacacaaaaa-tagacagcgggtcctaccattaagtggatcccaccatcattaattat 36748563  T

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Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 42503032 - 42503130
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 201  Q
    |||||||||||||||| ||||||||||||||  || |||||  |  | |||||||||||||| | |||  ||||| ||| || || |||||||||||||    
T  42503032 atctttgctccatttaagtttcctcaatttaccccatttcatatcatagatgtgtgacatgtagaaaaaataaaatcaatggctgtgattaaaaggttt 42503130  T

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Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24557183 - 24557252
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||| ||||||| | ||| ||||||| |  ||| |||||||| ||||||||||||| ||||||||||||    
T  24557183 ttggaaagagatatagacataaaataggtaatgggtcctaccattaagtgagtcccatcatcattaatta 24557252  T

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Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 7870441 - 7870337
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||||  || |||||||||  || ||| |  || | |||||||||||| ||| |||  ||||| ||| ||||| ||||||||    
T  7870441 gagtccatctttgctccatttagactttctcaatttaccccatttgaagttatagatgtgtgacatatggaaaaaataaaatcaatggttgtgattaaaa 7870342  T
Q  197 ggttt 201  Q
    |||||    
T  7870341 ggttt 7870337  T

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Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 34587395 - 34587359
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattcctt 139  Q
    |||||||||||||||| |||||||||||||| |||||    
T  34587395 atctttgctccatttaagtttcctcaatttactcctt 34587359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 37966449 - 37966520
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||| ||||||||||||||| || | |||||||||||| |||  ||||  | ||||||||||||||||    
T  37966449 agagagataaacacaaaaaatagattgtaggtcctaccactaattga-acccaataccattaattatatttta 37966520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 42503990 - 42503954
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaattta 133  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  42503990 gagtccatctttgctccatttaggcttcctcaattta 42503954  T

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Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 25084730 - 25084806
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 25084806  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9559056 - 9559132
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9559056 ttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 9559132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4888540 - 4888464
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||    
T  4888540 ttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcccaccatcattaattatatttta 4888464  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16366591 - 16366515
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  16366591 ttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtcccaccatcattaattatatttta 16366515  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21151225 - 21151149
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||    
T  21151225 ttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccatcattaattatatttta 21151149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12139400 - 12139323
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagt-gagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||    
T  12139400 ttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcattaattatatttta 12139323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7362641 - 7362565
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| || || |||||||||||||||||||||||    
T  7362641 ttggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcattaattatatttta 7362565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18198329 - 18198253
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||| | |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  18198329 ttggagataaatagacacaaaaaatagatggtgggttctgccactaagtgagtcccaccatcattaattatatttta 18198253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45260429 - 45260505
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||| |||||||||||||||||||    
T  45260429 ttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaattatatttta 45260505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 32916025 - 32915954
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    |||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||| |||||||||||    
T  32916025 agagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaattatatttt 32915954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44648037 - 44647959
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgag--tcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||| |  |||| ||||||||||||||||||||    
T  44648037 ttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtctccctccatcattaattatatttta 44647959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33450580 - 33450503
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||    
T  33450580 ttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 33450503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47500284 - 47500361
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||||    
T  47500284 ttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 47500361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39855815 - 39855891
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||| |||| ||||||| | ||||||||||||||| |||||| |||||||||||| ||||||    
T  39855815 ttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtcccatcatcattaattaaatttta 39855891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47799902 - 47799978
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  || ||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  47799902 ttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttttta 47799978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34985947 - 34986024
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| |||||||||||| ||  |||||||| ||||||||| ||||||||||||| |||||    
T  34985947 ttggagagagatagacacaaaagaatagatggtgggtcaaaccactaaatgagtcccatcatcattaattatttttta 34986024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 47226078 - 47226152
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| ||||||||||||  |||||| ||| |||||||| || ||||||||||||||||||||||||||    
T  47226078 ttggagagagataaacacaaaaaata--tggtgggtcccaccactaaatgggtcccaccatcattaattatatttta 47226152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 46802336 - 46802403
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||| | ||||||||    
T  46802336 gagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtcccaccaccgttaattat 46802403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 989202 - 989132
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||  |||| ||||| |||||||||    
T  989202 ttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccataattaattat 989132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 41347097 - 41347245
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 202  Q
    ||||||||| |||||||    |||| |||||| ||| || | ||||| ||||| ||||||||||||||| | ||| ||| || |||||||||||  ||||    
T  41347097 atctttgcttcatttagcaagcctccatttatccctgtttattttgtagatgtctgacatgtggcaaatattaaatcaagggctgagattaaaaaattta 41347196  T
Q  203 gcatgaacactt-tttaaagaaaaataaaacacgctatcttcttctttc 250  Q
     ||| ||||||| ||||| |||||||||||||| || | ||||||||||    
T  41347197 acataaacacttgtttaatgaaaaataaaacacactcttttcttctttc 41347245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19027685 - 19027751
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||||||||| || ||||||| ||||| |||||||||  ||||||||||||||    
T  19027685 ttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatcatta 19027751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20726951 - 20726885
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||||||||| || ||||||| ||||| |||||||||  ||||||||||||||    
T  20726951 ttggagagagatagacacaaaaaaataaatggtgggtcctatcactaagtggatcccaccatcatta 20726885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 30588602 - 30588532
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||  ||  || ||||| ||||||||| |||||||||||||||||||| |||||    
T  30588602 agagatagacacaaaaaataagtgacgggtcctatcactaagtgggtcccaccatcattaattatttttta 30588532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 18947279 - 18947392
Alignment:
Q  90 ttttatggagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgag 189  Q
    |||| ||||||  ||||||||||||||||||   |||| |||||| || ||||||||  | |||||  |||||||||||||| ||||| ||| |||||||    
T  18947279 ttttttggagtgcatctttgctccatttagggagcctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgag 18947378  T
Q  190 attaaaaggtttag 203  Q
    |||| |||| ||||    
T  18947379 attagaaggcttag 18947392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 28528624 - 28528549
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    ||||||||||||||||| |||||| |  |||||  ||||| ||||||| || ||||||||||||||||||| ||||    
T  28528624 ttggagagagatagacaaaaaaaacaagtggtgagtcctatcactaagcgaatcccaccatcattaattatttttt 28528549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14696759 - 14696825
Alignment:
Q  1 ttggagagagatagacac-aaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||| ||||||||  |||||| ||||| |||||||||  ||||||||||||||    
T  14696759 ttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 14696825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 19889042 - 19889112
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||| ||||||||||  | |||| ||||| ||||||||| || ||||||||||||||||| |||||    
T  19889042 agagatagatacaaaaaataagttgtgggtcctatcactaagtgggttccaccatcattaattatttttta 19889112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 16980471 - 16980536
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacat 162  Q
    |||||||||||||||||||||||    |||||||||| |||||||||||||   ||||||||||||    
T  16980471 gagtctatctttgctccatttagcaagcctcaatttactccttttcactttacagatgtgtgacat 16980536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 25675809 - 25675716
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    |||||||||||||||| |||  ||| ||||| ||||||||| | | | |||||||||||||||| |||  ||||  ||| ||||||||||||||    
T  25675809 atctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtggtaaaaataaattcaatggttgagattaaaa 25675716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 18948316 - 18948216
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttta 202  Q
    ||||||||||||||||||   |||  |||||| || ||||||||  | ||||| ||||||||||||||| |||||  || || ||||||||||||| |||    
T  18948316 atctttgctccatttagggagccttcatttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagattaaaaggctta 18948217  T
Q  203 g 203  Q
    |    
T  18948216 g 18948216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 29631115 - 29631051
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||| |||||| |||| ||| ||||||| ||  ||||||| ||||||||||||    
T  29631115 agagatagacacaaaacatagatagtgggtccaaccactatgtaggtcccactatcattaattat 29631051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29844364 - 29844316
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagt 49  Q
    ||||||||||||||||||| ||||||||| |||| | ||||||||||||    
T  29844364 ttggagagagatagacacataaaatagatagtgggttctaccactaagt 29844316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30102567 - 30102501
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||||| |||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  30102567 ttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 30102501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 32916236 - 32916166
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||| |||| |||||||| | |||| || ||||||||||||  | ||||||||||||||||| |||||    
T  32916236 agagatacacacgaaaaataggttgtgggtcataccactaagtggattccaccatcattaattatttttta 32916166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35737186 - 35737128
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccacc 59  Q
    ||||||||||||||||||||||||||  |||||| ||| | ||||| ||| ||||||||    
T  35737186 ttggagagagatagacacaaaaaataagtggtgggtcccatcactaggtgggtcccacc 35737128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47080502 - 47080433
Alignment:
Q  1 ttggagagagatagacacaaaaaataga-tggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    ||||||||||||||||||||||||   | || ||| ||||| ||||||| | ||||||||||||||||||    
T  47080502 ttggagagagatagacacaaaaaaacaagtgatgggtcctatcactaagcgggtcccaccatcattaatt 47080433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 676030 - 676094
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||| ||||||||||||  |||||  ||||| || ||| |||||| ||||||||||||||||    
T  676030 agagataaacacaaaaaatatgtggtgattcctatcattaaatgagtctcaccatcattaattat 676094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 23142567 - 23142619
Alignment:
Q  19 aaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||| |||| |  ||||||||||||||||||||||  |||||||||    
T  23142567 aaaaaatagatagtggattataccactaagtgagtcccaccactattaattat 23142619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4804521 - 4804445
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4804521 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 4804445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 27826608 - 27826535
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  27826608 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 27826535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21159371 - 21159447
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  21159371 ttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 21159447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7162157 - 7162081
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  7162157 ttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccatcattaattatatttta 7162081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12412710 - 12412634
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  12412710 ttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaattatatttta 12412634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13089751 - 13089827
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  13089751 ttggagagagatagacacaaaatatagatggtgggtcctaccactaagtgggccccaccatcattaattatatttta 13089827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17944235 - 17944159
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||||    
T  17944235 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtcccaccatcattaattatatttta 17944159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1249150 - 1249224
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||| |||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  1249150 ttggagagagacagaca--aaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 1249224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24484952 - 24484876
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  24484952 ttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttttta 24484876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 29698220 - 29698160
Alignment:
Q  17 acaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattatatttta 29698160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 227565 - 227642
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||| ||||||| ||||| |||||    
T  227565 ttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatcccatcatcattgattatttttta 227642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7215854 - 7215923
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||| || ||||||| |||||||||||    
T  7215854 ttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaatta 7215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2800613 - 2800689
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||| ||||||||| |||| || ||||| |||||| |||||||||||||| ||||| |||||    
T  2800613 ttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattatttttta 2800689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 13888524 - 13888601
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| |||||||| |||||||||||| |||||||| ||| || |||||| ||||||||||||| |||||    
T  13888524 ttggagagagatatacacaaaataatagatggtggttcctaccattaactgggtcccatcatcattaattatttttta 13888601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32254033 - 32254109
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||| |||||||||| |||||| || |||||| ||||| || |||||||||||||| |||||||||||| |||||    
T  32254033 ttggagggagatagacaaaaaaaaaaggtggtgggtcctatcattaagtgagtcccactatcattaattatttttta 32254109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2142295 - 2142371
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| ||| | || || ||| || ||||||||||||||||| |||||    
T  2142295 ttggagagagatagacacaaaaaataagtggtgggtcccatcattaggtgggttccaccatcattaattatttttta 2142371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32737930 - 32737897
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtgg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  32737930 ttggagagagatagacacaaaaaatagatggtgg 32737897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 2720411 - 2720376
Alignment:
Q  36 tcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2720411 tcctaccactaagtgggtcccaccatcattaattat 2720376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7098197 - 7098263
Alignment:
Q  1 ttggagagagatagacacaaaaaa-tagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||||| |||||| ||  |||||| ||||| |||||||||  ||||||||||||||    
T  7098197 ttggagagagatagacaaaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 7098263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7545711 - 7545645
Alignment:
Q  1 ttggagagagatagaca-caaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||||| |||||||||  |||||| ||||| |||||||||  |||||| |||||||    
T  7545711 ttggagagagatagacaccaaaaaataagtggtgggtcctatcactaagtggatcccactatcatta 7545645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 12734478 - 12734413
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||| ||||||| |||||  |||  |||| |||||||||| |||||||||||||||||||    
T  12734478 agagagatagaaacaaaaactagataatgga-cctatcactaagtgaatcccaccatcattaattat 12734413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17828570 - 17828639
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||||||||| ||||||||| |||| | |||| | ||||||  ||||| ||||| ||||||    
T  17828570 ttggagagagatagacacataaaatagatagtggattctactattaagtggatcccatcatcaataatta 17828639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4895737 - 4895813
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4895737 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 4895813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35660611 - 35660687
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35660611 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 35660687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11775866 - 11775790
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  11775866 ttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgtcattaattatatttta 11775790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 14349876 - 14349800
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  14349876 ttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 14349800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18625423 - 18625499
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  18625423 ttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 18625499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32129619 - 32129695
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  32129619 ttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 32129695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37266804 - 37266728
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  37266804 ttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaattatatttta 37266728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34827265 - 34827189
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  34827265 ttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaattatatttta 34827189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 40753164 - 40753240
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  40753164 ttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtcccaccatcattaattatatttta 40753240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13032191 - 13032115
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||| || ||||||||||||||||||||||||||    
T  13032191 ttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtcccaccatcattaattatatttta 13032115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 19778797 - 19778695
Alignment:
Q  130 tttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt-tttaaagaaaaata 228  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||||||| || ||||||||||||||| | |||||| ||||||| | ||| ||||||||    
T  19778797 tttattcctttttactttattgatgtttgacatgtggcaaatgtaaaaataagggttgagattaaaagctctagcataaacacttgtgtaatgaaaaata 19778698  T
Q  229 aaa 231  Q
    |||    
T  19778697 aaa 19778695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 4592858 - 4592797
Alignment:
Q  16 cacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  4592858 cacaaaaaatagatggtgggtcttaccactaagtgggtcccaccatcattaattatatttta 4592797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3057156 - 3057232
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||| ||||||| |||||||||||||||||||| |||||||| |||||||||| ||  ||||||||||||||||||    
T  3057156 ttggatagagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaattatatttta 3057232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36290675 - 36290599
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| ||||| |||||||||  ||||||||||||||||||| |||||    
T  36290675 ttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttttta 36290599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39902488 - 39902412
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||| ||  | |||||||||||||||||||||||    
T  39902488 ttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggattccaccatcattaattatatttta 39902412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27428883 - 27428949
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaa 67  Q
    ||||| |||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||||    
T  27428883 ttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29341068 - 29340999
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||||||||| ||||||||| |||| |||||| | |||||| |||||||||||||||||||    
T  29341068 ttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 8440981 - 8441049
Alignment:
Q  9 agatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||| ||||||||||||||   | |||||||||||| ||||||||||||||||||||||||||    
T  8440981 agatagacaccaaaaatagatggtgcgacataccactaagtgtgtcccaccatcattaattatatttta 8441049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 3057487 - 3057419
Alignment:
Q  3 ggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||| |||||| ||||| ||| ||||||||| |||||||| ||| |||||||||||||    
T  3057487 ggagagagatagacaaaaaaaaaagatgatggatcctaccacaaagtgagttccatcatcattaattat 3057419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41660179 - 41660103
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| ||  | ||||| ||| |||||||||||||||||||| |||||    
T  41660179 ttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaattatttttta 41660103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 28142807 - 28142853
Alignment:
Q  31 gtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||    
T  28142807 gtggatcctaccattaagtgagtcccaccatcattaattatatttta 28142853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2984392 - 2984468
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||| ||||||  || ||  ||||| |||||| || |||||||||||||||||||| |||||    
T  2984392 ttggagagagatagacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaattatttttta 2984468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 43222193 - 43222129
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||||||||||||||| || || || ||| ||  |||||||||||||||||||    
T  43222193 agagatagacacaaaaaatagatggtgggtcttatcattaaatggatcccaccatcattaattat 43222129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 43309181 - 43309113
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    ||||||||||||||||| ||||||||||| |||| || ||||| ||| || || |||||||||||||||    
T  43309181 ttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggttccaccatcattaatt 43309113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 33530768 - 33530665
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||| |   | |||||||||||  | | |||  ||||  ||| ||||||||||||||    
T  33530768 gagtcaatctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaa 33530669  T
Q  197 ggtt 200  Q
    ||||    
T  33530668 ggtt 33530665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 18653430 - 18653364
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||||||||||||| |||  | |||||| |||||||||| |||||| | |||||||    
T  18653430 agagagatagacacaaaaaatagatagtgagttctaccattaagtgagtctcaccattaataattat 18653364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3041309 - 3041386
Alignment:
Q  1 ttggagagagatagacacaaaaaataga-tggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| ||||||||   | |||||| ||||| ||||||| | |||||||||||||||||||| |||||    
T  3041309 ttggagagagatagatacaaaaaaacaagtggtgggtcctatcactaagcgggtcccaccatcattaattatttttta 3041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 19912553 - 19912622
Alignment:
Q  377 gcattcttccatctcttcaaccttctgattaaatgaaaaattatattttcctgaattgtttcctgtttta 446  Q
    |||||||||||||||||||   ||||||||||  | |||| |||||||||||  ||||||||||||||||    
T  19912553 gcattcttccatctcttcaggtttctgattaatcggaaaaatatattttccttgattgtttcctgtttta 19912622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 32793444 - 32793371
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||| |||||||||||||||| ||  || ||| |||||||  ||||||| ||||| ||||||||||||    
T  32793444 gagagagatatacacaaaaaatagatgatgattcttactactaagtaggtcccacaatcatcaattatatttta 32793371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 1222376 - 1222309
Alignment:
Q  149 ttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt 216  Q
    |||||||||||||  |||||||||||||| ||| ||||| ||||||||| |||| ||| | |||||||    
T  1222376 ttgatgtgtgacacttggcaaatgtaaaatcaaaggttgggattaaaagctttaacataagcactttt 1222309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 10362018 - 10362092
Alignment:
Q  3 ggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| ||| ||||| | | |||| |||||||| |||||| ||| |||| ||||||||||| |||||    
T  10362018 ggagagagatagagacataaaattggtagtggatcctaccattaagtgggtctcaccgtcattaattatttttta 10362092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 43378626 - 43378676
Alignment:
Q  151 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 201  Q
    ||||||||||| ||||||||  ||||| ||| |||||||||||||||||||    
T  43378626 gatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggttt 43378676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 43379499 - 43379449
Alignment:
Q  151 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggttt 201  Q
    ||||||||||||||||||||  ||||| ||| ||||| |||||||||||||    
T  43379499 gatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggttt 43379449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 120079 - 120172
Alignment:
Q  103 atctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||||||||||||||| |||||||||||||  || |||||  || | |||| ||||||| ||| |||  |||||  || ||||||||||||||    
T  120079 atctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaa 120172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 1217846 - 1217911
Alignment:
Q  151 gatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactttt 216  Q
    |||||||||||| |||||||||| ||| ||| ||||  |||||||||||||| ||| | |||||||    
T  1217846 gatgtgtgacatttggcaaatgtgaaatcaagggtttggattaaaaggtttaacataagcactttt 1217911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 17247476 - 17247403
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| |||||||||| |||||| | ||| || |||||| || ||| ||| ||||||||| |||||    
T  17247476 gagagagatagacgcaaaaaataggtggtgggttctatcattaagtgcgttccatcataattaattatttttta 17247403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31653108 - 31653039
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||| ||||| ||||||||| | |  |||||| | |||||||||| ||| |||||||||||    
T  31653108 ttggagagagataaacacataaaatagatagcgagtcctactattaagtgagtctcacaatcattaatta 31653039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 32316509 - 32316571
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||||||| |||    ||| | ||||||||||||||||||||| ||||| ||||||    
T  32316509 agagagatagacacaaaaactag----tggattctaccactaagtgagtcccacaatcataaattat 32316571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 9465810 - 9465746
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||| ||||||| |||||| ||||| || ||| ||| |  ||||||||||||||||    
T  9465810 agagatagacacataaaataggtggtggatcctatcattaaatgaatttcaccatcattaattat 9465746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 37839994 - 37840034
Alignment:
Q  129 atttattccttttcactttgttgatgtgtgacatgtggcaa 169  Q
    |||||| |||||||||||| |||| ||||||||||||||||    
T  37839994 atttatcccttttcactttattgacgtgtgacatgtggcaa 37840034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16399 - 16475
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  16399 ttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcccatcatcattaattatatttta 16475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 208136 - 208060
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  208136 ttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattatatttta 208060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12151840 - 12151764
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||    
T  12151840 ttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattatatttta 12151764  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 50294065 - 50294141
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||    
T  50294065 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccatcattaattatatttta 50294141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 12380924 - 12380988
Alignment:
Q  13 agacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatatttta 12380988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 12384991 - 12385055
Alignment:
Q  13 agacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattatatttta 12385055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50484459 - 50484383
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||| |||||||||||||||||    
T  50484459 ttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtcccaccgtcattaattatatttta 50484383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23861954 - 23862033
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtgg---ctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||  |||||||||||||||||||||||||    
T  23861954 ttggagagagatagacacaaaaaatagatggtggtgaatcctaccactaagtggatcccaccatcattaattatatttta 23862033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 24977310 - 24977237
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||||||| ||||||||||    
T  24977310 gagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcattagttatatttta 24977237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 48327156 - 48327231
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||||||| || |||||||||||||||||||||||    
T  48327156 ttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtgggt-ccaccatcattaattatatttta 48327231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30077646 - 30077722
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||||||  |||||| | ||| ||||||||||||||||| |||||||||||| |||||    
T  30077646 ttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaattatttttta 30077722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 39426283 - 39426207
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||||| || ||||||| |||||||||||| |||||    
T  39426283 ttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatttttta 39426207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 52280041 - 52280117
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||| ||||||||  |||||| ||||| |||||||||  ||||||||||||||||||| |||||    
T  52280041 ttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttttta 52280117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 40328345 - 40328275
Alignment:
Q  6 gagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||| || |||||||||||| ||||||||||    
T  40328345 gagagatagacacaaaaa-tagatggtgggtcccaccactaagtgggttccaccatcattagttatatttta 40328275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32361309 - 32361377
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatt 69  Q
    |||||||||||| ||||||||| ||||||||||| |||||| |||||||  |||||| |||||||||||    
T  32361309 ttggagagagatggacacaaaagatagatggtggatcctactactaagtaggtcccatcatcattaatt 32361377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18976306 - 18976377
Alignment:
Q  1 ttggagagagatagacacaaaa-aatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||||||||| |||||||||||| ||| |||| |||||  |||||| |||||||||||||    
T  18976306 ttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggtcccatcatcattaattat 18976377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 24413291 - 24413354
Alignment:
Q  8 gagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||||||||| |||||||| ||||| || ||| || ||||||||||||||||||||    
T  24413291 gagatagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaattat 24413354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 1765279 - 1765194
Alignment:
Q  129 atttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaaggtttagcatgaacactt 214  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||  || || |  ||||||||| | |||||| |||||||    
T  1765279 atttattccttttcactttattgatgtgtagcatgtggcaaatgtaaaactaagggctaggattaaaagctctagcataaacactt 1765194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 7338867 - 7338767
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaatgtaaaaacaacggttgagattaaaa 196  Q
    ||||| |||||||||||||||| |||||||||||||| ||| |||||  |  | ||||||| |||||||| |||  ||||| ||| ||||| ||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T
Q  197 g 197  Q
    |    
T  7338767 g 7338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 26860056 - 26860128
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||| ||||||||| || | ||||| |||||||||  |||||| |||||||||||| |||||    
T  26860056 agagagatagacacataaaatagatagtaggtcctatcactaagtggatcccacaatcattaattatttttta 26860128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 32887785 - 32887852
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||| ||||||||||| |||||| || |||| |||||||| ||| || ||||||||||||||||||||    
T  32887785 gagaaagatagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattat 32887852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5047383 - 5047453
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    |||||||||||| ||  || |||||||||  ||| ||||||||||| ||| ||||||||||||||||||||    
T  5047383 ttggagagagattgatgcataaaatagataatggatcctaccactatgtgggtcccaccatcattaattat 5047453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7840681 - 7840739
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccacc 59  Q
    |||||||||||||||||||| ||||||||| ||| |||||||| |||| | ||||||||    
T  7840681 ttggagagagatagacacaagaaatagatgatgggtcctaccattaagcgggtcccacc 7840739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6948832 - 6948899
Alignment:
Q  1 ttggagagagatagacacaaaaaataga--tggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    ||||||||||||||||| |||||||| |  |||||| ||||| |||||||||  ||||||||||||||    
T  6948832 ttggagagagatagacaaaaaaaatataagtggtgggtcctatcactaagtggatcccaccatcatta 6948899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7845043 - 7844992
Alignment:
Q  19 aaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    |||||||||||  ||| ||||||||||||||| |||||||||| ||||||||    
T  7845043 aaaaaatagatattggatcctaccactaagtgtgtcccaccattattaatta 7844992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 23916128 - 23916089
Alignment:
Q  32 tggctcctaccactaagtgagtcccaccatcattaattat 71  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  23916128 tggctcctaccactacgtgggtcccaccatcattaattat 23916089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 18107323 - 18107389
Alignment:
Q  1 ttggagagagatagacac-aaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||| ||||||||  |||||| ||||| |||||| ||  ||||||||||||||    
T  18107323 ttggagagagatagacacaaaaaaataagtggtgggtcctatcactaaatggatcccaccatcatta 18107389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 46608409 - 46608455
Alignment:
Q  31 gtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||| ||||||||||||||| | |||||||||||||||||| |||||    
T  46608409 gtgggtcctaccactaagtgggacccaccatcattaattatttttta 46608455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 15668348 - 15668275
Alignment:
Q  97 gagtctatctttgctccatttaggtttcctcaatttattccttttcactttgttgatgtgtgacatgtggcaaa 170  Q
    ||||| |||||||||||||||| |    ||| ||||| ||||||||||| | | ||||||||||||||||||||    
T  15668348 gagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaa 15668275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45978078 - 45978045
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtgg 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  45978078 ttggagagagatagatacaaaaaatagatggtgg 45978045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12380879 - 12380907
Alignment:
Q  1 ttggagagagatagacacaaaaaatagat 29  Q
    |||||||||||||||||||||||||||||    
T  12380879 ttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12384946 - 12384974
Alignment:
Q  1 ttggagagagatagacacaaaaaatagat 29  Q
    |||||||||||||||||||||||||||||    
T  12384946 ttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 26372321 - 26372249
Alignment:
Q  5 agagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||  ||||||||   | | |||||||| |||||| ||||||||| |||||||||| |||||    
T  26372321 agagagatagacacgtaaaatagacaatagatcctaccattaagtgggtcccaccaccattaattatttttta 26372249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 33441603 - 33441531
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttt 76  Q
    |||||||||||||||||||||||  |||||| || || |  ||| ||||||| | ||||||||||||| ||||    
T  33441603 gagagagatagacacaaaaaataagtggtggatcatatctttaattgagtcctatcatcattaattatttttt 33441531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7220 - 7144
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||||    
T  7220 ttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaattatatttta 7144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 22450 - 22520
Alignment:
Q  7 agagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| |||| || |||||||||||||||    
T  22450 agagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaataattaattatatttta 22520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 9203 - 9276
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatt 74  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||  | ||||||||||||||||||||    
T  9203 ttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggattccaccatcattaattatatt 9276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 17311 - 17384
Alignment:
Q  4 gagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    |||||||||||||||||||||||  || ||| ||||| ||||||||| |||||||||||||||||||| |||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaattatttttta 17384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6437 - 6513
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaattatatttta 77  Q
    ||||| ||||| |||||||||||||||||||||| |||||| ||||| || || | |||||||||||||||||||||    
T  6437 ttggaaagagacagacacaaaaaatagatggtgggtcctacaactaaatgggtacaaccatcattaattatatttta 6513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0664 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4702 - 4768
Alignment:
Q  1 ttggagagagatagacac-aaaaaatagatggtggctcctaccactaagtgagtcccaccatcatta 66  Q
    |||||||||||||||||| ||||||||  |||||| ||||| |||||||||  ||||||||||||||    
T  4702 ttggagagagatagacacaaaaaaataagtggtgggtcctatcactaagtggatcccaccatcatta 4768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 58753 - 58684
Alignment:
Q  1 ttggagagagatagacacaaaaaatagatggtggctcctaccactaagtgagtcccaccatcattaatta 70  Q
    ||||||||||||| ||| | ||||||||| |||| |||||||| |||||| || ||| ||||||||||||    
T  58753 ttggagagagataaacatataaaatagatagtggatcctaccattaagtgggttccatcatcattaatta 58684  T

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