View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_high_6 (Length: 524)
Name: NF15167_high_6
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_high_6 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 7 - 524
Target Start/End: Original strand, 11576711 - 11577228
Alignment:
| Q |
7 |
tcgaagaatatcagcaggtcttgtagttggaaaagtgtcaaattcctcatccaattcatctggatgacaagcttctgcctgtgaaagcctagcatccatg |
106 |
Q |
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| T |
11576711 |
tcgaacaatatcagcaggtcttgtagttggaaaagtgtcaaattcctcatccaattcatctggatgacaagcttctgcctgtgaaagcctagcatccatg |
11576810 |
T |
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| Q |
107 |
tggggtggattccttggccggaaccggtaattccaaatcccaatcacaaacaagtaaagaaaaatagttggcagtatcaattcagggtagcaaacaagta |
206 |
Q |
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| T |
11576811 |
tggggtggattccttggccggaaccggtaattccaaatcccaatcacaaacaagtaaagaaaaatagttggcagtatcaattcagggtagcaaacaagta |
11576910 |
T |
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| Q |
207 |
tcaagaacaagacatgaacaaggcaagttgtaattgggtttctccaagtgcaaatgtcgttaagccatttacacacagcagtaaaacccgagagtagtga |
306 |
Q |
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| T |
11576911 |
tcaagaacaagacatgaacaaggcaagttgtaattgggtttctccaagtgcaaatgtcgttaagccatttacacacagcagtaaaacccgagagtagtga |
11577010 |
T |
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| Q |
307 |
cattatgcgatgaaaattggctttgcttctccttagactccacatatggtaatccacatcaagcatatactcgactgattcacgtcgaagcggcggctca |
406 |
Q |
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| T |
11577011 |
cattatgcgatgaaaattggctttgcttctccttagactccacatatggtaatccacatcaagcatatactcgactgattcacgtcgaagcggcggctca |
11577110 |
T |
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| Q |
407 |
gctcttgctagccttgccgccacaatctgcatggcctgatagcggagccaatcaatgtgtctaacaggtatcggttgaacataatgcattttgggaagca |
506 |
Q |
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| T |
11577111 |
gctcttgctagccttgccgccacaatctgcatggcctgatagcggagccaatcaatgtgtctaacaggtatcggttgaacataatgcattttgggaagca |
11577210 |
T |
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| Q |
507 |
aaggtcttccatattgag |
524 |
Q |
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| T |
11577211 |
aaggtcttccatattgag |
11577228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 24949955 - 24950007
Alignment:
| Q |
320 |
aaattggctttgcttctccttagactccacatatggtaatccacatcaagcat |
372 |
Q |
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| T |
24949955 |
aaattggctttgcttcttctcatactccacatatgtgaatccacatcaagcat |
24950007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 3179 - 3238
Alignment:
| Q |
319 |
aaaattggctttgcttctccttagactccacatatggtaatccacatcaagcatatactc |
378 |
Q |
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| T |
3179 |
aaaatttgctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactc |
3238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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