View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_high_9 (Length: 434)
Name: NF15167_high_9
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 32905947 - 32905681
Alignment:
| Q |
10 |
gcagagagaaagctacagaatgaatcagacatgatgggaaggatgattagaatcagcttattatcttctacaaaacacaaggtttttattgtatactatt |
109 |
Q |
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| T |
32905947 |
gcagagagaaagctacagaatgaatcagacatgatgggaaggatgattagaatcagcttattatcttctacaaaacacaaggtttttattgtatactatt |
32905848 |
T |
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| Q |
110 |
tcacattggaaaactaaggataatctctgcaaattttcactgtttgaaaatagggttttaattagtttgagtgaagatagaatgagaaggaagctgaaga |
209 |
Q |
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| T |
32905847 |
tcacattggaaaactaaggataatctctgcaaattttcactgtttgaaaataggattttaaatagtttgagtgaagatagaatgagaaggaagctgaaga |
32905748 |
T |
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| Q |
210 |
agagacagtgtatttataagaagtaaagaacgttgtagtaaaagctagcactaggtggagcaacaag |
276 |
Q |
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| T |
32905747 |
agagacagtgtatttataagaagtaaagaacgttgtagtaaaagctagcattaggtggagcaacaag |
32905681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 32905620 - 32905539
Alignment:
| Q |
339 |
gagagagttaaggtgtttctttaaaaggacaacagtcacagcatgatgt--ttgtcatgtgttattaaagtttgcttcttcc |
418 |
Q |
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| T |
32905620 |
gagagagttaaggtgtttctttaaaaggacaacagtcacagcatgatgttgttgtcatgtgttattaaagtttgcttcttcc |
32905539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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