View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_11 (Length: 430)
Name: NF15167_low_11
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 23266981 - 23266578
Alignment:
| Q |
15 |
tcatcataatggcagaacatcttaactgtgatgtcaaataagaactagaaaatgttactaaaagttttgaaaccatttaga------------agataaa |
102 |
Q |
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| T |
23266981 |
tcatcataacggcagaacatcttaactgtgatgtcaaataagaactagagaatgttactaaaagttttgaaaccatttagagtaagataaagaagataaa |
23266882 |
T |
|
| Q |
103 |
ttgaaaattgtgtgaaatagtacttacaagagtttgttatagaaaaagatatggaaagaaaaatgatcatagcataaacaatatttaaaaccttagacat |
202 |
Q |
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| T |
23266881 |
ttgaaaattgtgtaaaatagtacttacaagagtttgttatagaaaaagatatggaaagaaaaatgatcatagcataaacaatatttaaaaccttaaacat |
23266782 |
T |
|
| Q |
203 |
attttatttcctttgaatgtataaataaaattatttgagcactttatattgtgaaaaatccatgctttgttaaacacaaaccattattaaaattataaac |
302 |
Q |
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| T |
23266781 |
attttatttcctttgaatgtaaaaataaaattatttgagcactttataatgtgaaaaatccatgctttgttaaacacaaaccattattaaaattataaac |
23266682 |
T |
|
| Q |
303 |
attattaaagatctcttagatcatgtattgatatgttgtgtttgtctctttagcttaatgaatattcagttgtcctttcattatatttttaactagcggg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23266681 |
attattaaagatctcttagatcatgtattgatatgttgtgtttgtctctttagctcaatgaatattcaattgtcctttcattatatttttaactagcggg |
23266582 |
T |
|
| Q |
403 |
gtga |
406 |
Q |
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|||| |
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| T |
23266581 |
gtga |
23266578 |
T |
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