View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15167_low_12 (Length: 424)
Name: NF15167_low_12
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 36645993 - 36646171
Alignment:
| Q |
18 |
gatgatccttgcttaccaacctttaaaaatataacttttatatttcaaattagacaaagttttattttaaaatgtcgaatatgcaaaaatatttttatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36645993 |
gatgatccttgcttaccaacctttaaaaatataacttttgtatttcaaattagacaaagttttattttaaaatgtcgaatatgcaaaaatatttttatga |
36646092 |
T |
|
| Q |
118 |
gtctttaaaaagaaaatatttgtaatgtcatcttcctttgtaagatttggaagaacaaaagtatgccatttctttgtac |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36646093 |
gtctttaaaaagaaaatatttgtaatgtcatcttcctttgtaagatttggaagaacaaaagtatgccatttctttgtac |
36646171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 247 - 411
Target Start/End: Original strand, 36646222 - 36646386
Alignment:
| Q |
247 |
tgtagacaagcctataacagtgtgacaaaccttccattttcctatcttatttagactttctccattagcatcaacgcatgcatacgcagaactgcaacca |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36646222 |
tgtagacaagcctataacagtgtgacaaaccttccattttcctatcttatttagactttctccattagcatcaacgcatgcatacgcagaactgcaacct |
36646321 |
T |
|
| Q |
347 |
gcaagtaaagaaacatttatttatcattaatgnnnnnnnttactcaataaacacatgttcatttc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36646322 |
gcaagtaaagaaacatttatttatcattaatgaaaaaaattactcaataaacacatgttcatttc |
36646386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University