View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_14 (Length: 393)
Name: NF15167_low_14
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_14 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 22584 - 22948
Alignment:
| Q |
18 |
ttaagtgtatgttgatttgtctcaatgaactccttggtttgatcctttttctgatcatgctaatgaatgttttttgtatgaaaatgtagaagatttataa |
117 |
Q |
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| T |
22584 |
ttaagtgtatgttgatttgtctcaatgaactccttggtttgatcctttttctgatcatgctaatgaatgttttttgtatgaaaatgtagaagatttataa |
22683 |
T |
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| Q |
118 |
ttggcattctgtctttttgtgagattaaattcaatatggcttgtatttttgttaaatattacttttctatatagttactttgtacatatttattaataac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684 |
ttggcattctgtctttttgtgagattaaattcaatatggcttgtatttttgttaaatattacttttctatatagttactttgtacatatttattaataac |
22783 |
T |
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| Q |
218 |
ataatgtaactgtagtaaggtcctaggatatttcttcaaagtcattgaaatttgcatagagtgtagattgtatagtaattaatatcctaagtataaccta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22784 |
ataatgtaactgtagtaaggtcctaggatatttcttcaaagtcattgaaatttgcatagagtgtagattgtatagtaattaatatcctaagtataaccta |
22883 |
T |
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| Q |
318 |
caagttatggatgttcttttctttgatggcacattctcttattttatgtgagaatgtttatgatg |
382 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22884 |
caagttatgtatgttcttttctttgatggcacattctcttattttatgtgagaatgtttatgatg |
22948 |
T |
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