View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_2 (Length: 631)
Name: NF15167_low_2
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 11 - 615
Target Start/End: Complemental strand, 13718513 - 13717907
Alignment:
| Q |
11 |
caaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgaggttactacgcgtcttcattgtccagcgtaaagtca |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13718513 |
caaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaatttcggatttgaggttactacgcgtcttcattgtccagcgtaaagtca |
13718414 |
T |
|
| Q |
111 |
tcatccattgtcctcattaatggccatttacatctttctatttggttggtgtcagtagagcgaaaagggaaaggataaagggaaaggagggttgaattgt |
210 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13718413 |
tcatccattgtcctcattaatgggcatttacatctttctatttggttggtgtcagtagagcgaaaagggaaaggataaagggaaaggacggttgaattgt |
13718314 |
T |
|
| Q |
211 |
agtggtggtagaatatcaccgcaatccaactctccttccttttcttcttttccttttctgtttctccatatgtatcacttctgctggaggtggtttcggc |
310 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13718313 |
agtggtggtggaatatcaccgcaatccaactctccttcctcttcttcttttccttttctgtttctccatatgtaccacttctgctggaggtggtttcggc |
13718214 |
T |
|
| Q |
311 |
caaattggtttgcgcgaattgccatccaaaatatgtttcggacattcagtaaattgaccatacaaaataatta--gtgttatgaggtattccatcttctt |
408 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13718213 |
caaattggtttgcacgaattgccatccaaaatatgtttcggacattcagtaaattgaccatacaaaataattagtgtgttatgaggtattccatcttctt |
13718114 |
T |
|
| Q |
409 |
gaaagcctctctacttcaacccaggagttttgacgtatgatttcaattttacttgttccctttaaacacgataaagcacaaatcaaacaaaatacatgta |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
13718113 |
gaaagcctctctacttcaacccaggagttttgacgtatgatttcaattttacttcttccttttaaacacgataaagcacaaatcaaacaaaataaatgta |
13718014 |
T |
|
| Q |
509 |
catatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaatctaagttaaag |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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|
| T |
13718013 |
catatgttagaacttcaacactcctatttagagaaattaacatattgacaatggggaaaaaagataacgtgaacattagtaacattaatctaagttaaag |
13717914 |
T |
|
| Q |
609 |
atgaaaa |
615 |
Q |
| |
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||||||| |
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| T |
13717913 |
atgaaaa |
13717907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 356 - 615
Target Start/End: Complemental strand, 29470183 - 29469917
Alignment:
| Q |
356 |
tcagtaaattgaccatacaaaataattagtgttatgaggtattccatcttcttgaaagcctct----------ctacttcaacccaggagttttgacgta |
445 |
Q |
| |
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||||||||||| |||| || ||||||||||||| |||||| |||||||||||||||||||||| ||||||||| || |||| || ||| || |
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| T |
29470183 |
tcagtaaattggccatccataataattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctacttcaatccgggagcttggacata |
29470084 |
T |
|
| Q |
446 |
tgatttcaattttacttgttccctttaaacacgataaagcacaaatcaaacaaaatacatgtacatatgttagaacttcaacactcctatttagagaaat |
545 |
Q |
| |
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|||||||||||||||||||||||||| | || || |||||||||| | ||||||||||||||||||||||| |||||||| | |||||||| |||| | |
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| T |
29470083 |
tgatttcaattttacttgttcccttttagcatgaaaaagcacaaa-ataccaaaatacatgtacatatgttagtacttcaactcacctatttatagaatt |
29469985 |
T |
|
| Q |
546 |
taacatattgacaatggggaaaaaaggttacgtgaacattagtaacattaatctaagttaaagatgaaaa |
615 |
Q |
| |
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| |||||||| ||||||| ||| ||||| |||| ||||||||||||||||| || ||||||||||||| |
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| T |
29469984 |
tgacatattg-taatgggg-gaaagggttaagtgagcattagtaacattaatcaaacttaaagatgaaaa |
29469917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 476
Target Start/End: Original strand, 29705866 - 29705898
Alignment:
| Q |
444 |
tatgatttcaattttacttgttccctttaaaca |
476 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
29705866 |
tatgatttcaattttacttgttccctataaaca |
29705898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 27322397 - 27322275
Alignment:
| Q |
14 |
aggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgaggttactacgcgtcttcattgtccagcgtaaagtcatca |
113 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||| || || ||||||| |||||||||| |||| || ||||||| |||||||||||| ||| |
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| T |
27322397 |
aggagaacactatctataaaagcagaaacgtatgagactggaacatcaattccggatttgagg----tacgtgttttcattggtcagcgtaaagtcctca |
27322302 |
T |
|
| Q |
114 |
tccattgtcctcattaatggccattta |
140 |
Q |
| |
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|||||| ||||| ||||||| |||||| |
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| T |
27322301 |
tccattatcctcgttaatgggcattta |
27322275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 5921678 - 5921720
Alignment:
| Q |
376 |
aataattagtgttatgaggtattccatcttcttgaaagcctct |
418 |
Q |
| |
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||||||||| ||| |||||| |||||||||||||||||||||| |
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| T |
5921678 |
aataattagcgttctgaggttttccatcttcttgaaagcctct |
5921720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 477
Target Start/End: Original strand, 5921756 - 5921789
Alignment:
| Q |
444 |
tatgatttcaattttacttgttccctttaaacac |
477 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
5921756 |
tatgatttcaattttacttgttcccttttaacac |
5921789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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