View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_21 (Length: 336)
Name: NF15167_low_21
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 43 - 325
Target Start/End: Original strand, 9575239 - 9575521
Alignment:
| Q |
43 |
ggataaaagtttccctaattccaaatgaaggtaatagtgcattttagcaaacaatacagattctctagaatcatgagacataagagtcatcaattcaact |
142 |
Q |
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| T |
9575239 |
ggataaaagtttccctaattccaaataaaggtaatagtgcattttggcaaacaatacagattctctaaaatcatgagacataagagtcatcaattcagct |
9575338 |
T |
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| Q |
143 |
tatgtacattgcatagttacacaagaaaaacatagctaatcaatatcagttacttggagcaagtttcggcatattcctaattagaattgattttgcctct |
242 |
Q |
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| T |
9575339 |
tatgtacattgcatagttacacaagaaaaacatatctaatcaatatcagttacttggtgcaagtttcggcatattcctaattagaattgattttgcctct |
9575438 |
T |
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| Q |
243 |
aaagttgattctaatttaacttgaagtcataatttatagcttttgcctccaaacatgatttttacatttaaattcacggttca |
325 |
Q |
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| T |
9575439 |
aaagttgattctaatttaacttgaagtcataatttatagcttttgcctccaaacatgatttttacatttaaattcacggttca |
9575521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 38845759 - 38845791
Alignment:
| Q |
222 |
attagaattgattttgcctctaaagttgattct |
254 |
Q |
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| T |
38845759 |
attagaattgattttgcctctatagttgattct |
38845791 |
T |
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