View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_low_24 (Length: 314)

Name: NF15167_low_24
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_low_24
NF15167_low_24
[»] chr3 (1 HSPs)
chr3 (1-297)||(52111965-52112261)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 52111965 - 52112261
Alignment:
Q  1 gcatatacatgcaattaaacaattaataagtaatccagaaaatgtattatgaagtaaaacaaaactacaaaactaaaatttagctttcttgagagaggta 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52111965 gcatatacatgcaattaaacaattaataattaatccagaaaatgtattatgaagtaaaacaaaactacaaaactaaaatttagctttcttgagagaggta 52112064  T
Q  101 aaggtaacagcagatcctataggagattttccaacttgaataccaaaagtatcataacgaagaaacagttccaccaccaaaagtctagaaaacaacacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52112065 aaggtaacagcagatcctataggagattttccaacttgaataccaaaagtatcataacgaagaaacagttccaccaccaaaagtctagaaaacaacacaa 52112164  T
Q  201 caaaatcctttccaggacattgcttattaccagccgtaggttgttctgtttcacgaccattagaccaaaacacatgctccaacaacttctctccctc 297  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52112165 caaaatcctttccgggacattgcttattaccagccgtaggttgttctgtttcacgaccattagaccaaaacacatgctccaacaacttctctccctc 52112261  T

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