View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_27 (Length: 298)
Name: NF15167_low_27
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 24994765 - 24994710
Alignment:
| Q |
243 |
gtcatacacataagtatcaataaaacaacaaccaacaaaatattgtaaaaacattt |
298 |
Q |
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| T |
24994765 |
gtcatacacataagtagcaataaaacaacaaccaacaaaatattgtaaaaacattt |
24994710 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 24994998 - 24994909
Alignment:
| Q |
9 |
atgaataaaaataagatacgatagtgagatgaaaaa-ttaatacatatatttttcaaggatnnnnnnntaagtttcatatttttaattgac |
98 |
Q |
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| T |
24994998 |
atgaataaaaataagata-gatagtgagattaaaaaattaatatatatatttttcaagaataaaaaattaattttcatatttttaattgac |
24994909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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