View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_low_28 (Length: 293)

Name: NF15167_low_28
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_low_28
NF15167_low_28
[»] chr4 (1 HSPs)
chr4 (1-288)||(21023600-21023888)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 21023888 - 21023600
Alignment:
Q  1 tctcatcaacaccactagaattatgcactccttatttccaaccggatcatagcctttgataacttatatacattacaagtatatatgtgctcaaagaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  21023888 tctcatcaacaccactagaattatgcactccttatttccaaccggatcatagcctttgatagcttatatacattacaagtatatatgtgctcaaagaagg 21023789  T
Q  101 gggcaccataatacactaatgtgggggccaatgatatgaatgggtctcgcacccaccatgctcgatattgtaaatctaatacttgtagaattatataaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21023788 gggcaccataatacactaatgtgggggccaatgatatgaatgggtctcgcacccaccatgctcgatattgtaaatctaatacttgtagaattatataaca 21023689  T
Q  201 attttatttactttacatattaaagtattgataatgtattgttg-tagagtgggcaactttcttaaagatttcttctactatattcttc 288  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  21023688 attttatttactttacgtattaaagtattgataatgtattgttgtttgagtgggcaactttcttaaagatttcttctactatattcttc 21023600  T

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