View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_3 (Length: 591)
Name: NF15167_low_3
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 7 - 553
Target Start/End: Original strand, 49861833 - 49862370
Alignment:
| Q |
7 |
gatcaagcggtcgaatgcgcggtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgta |
106 |
Q |
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| T |
49861833 |
gatcaagcggtggaatgcgctgtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgta |
49861932 |
T |
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| Q |
107 |
ttgatatgtggtttcagtctcattctacatgtccgctttgtagagcgcccgtggaggctgcgccggttcaagcgaccagacaagaagtgacaattgatat |
206 |
Q |
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| T |
49861933 |
ttgatatgtggtttcagtctcattctacatgtccgctttgtagagcgcccgtggaggctgcgccggttcaagcgaccagacaagaagtgacaattgatat |
49862032 |
T |
|
| Q |
207 |
gtgtgaaccggaattggttttgggttcgagttctggtgatgaaatgaaccagtctgtatcggaattttcttcttcttgttcttcctcatgttctgatgag |
306 |
Q |
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| T |
49862033 |
gtgtgaaccggaattggttttgggttcgagttctggtgaagaaatgaaccggtctgtatcggaattttcttcttcttgttcttcctcatgttctgatgag |
49862132 |
T |
|
| Q |
307 |
aagcaatcttcattggttgacattaccgttgagattccgagaaggagtgaatccgattgcaagagttttgctgtgggagagtcgagttgtgattcaccat |
406 |
Q |
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| T |
49862133 |
aagcaatcttcatcggttgacattaccgttgagattccgagaaggagtgaatccgattgcaagagttttgctgtgggagagtcgagttgtgattcaccat |
49862232 |
T |
|
| Q |
407 |
catcgtttcggtcaccaatgagtcgtgttttgtcgttcacgagaatccttagcagagagaggaaaccaagcatttctccgtcgttggattgtgccgcaga |
506 |
Q |
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| T |
49862233 |
catcgtttcggtcaccaatgagtcgtgttttgtcgttcacgagaatccttagcagagagaggaaaccaagcatttctccgtcgttggattg--------- |
49862323 |
T |
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| Q |
507 |
tgcagaatgaggtgaaagggaggagactcagtgagttgattgatgac |
553 |
Q |
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| T |
49862324 |
tgcagaacgaggtgaaagggaggagactcggtgagttgattgatgac |
49862370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 13998998 - 13998859
Alignment:
| Q |
19 |
gaatgcgcggtttgtttatcggagtttgaagatggagaaacaggtcgggttttacccaaatgtaatcatagttttcatattgattgtattgatatgtggt |
118 |
Q |
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| T |
13998998 |
gaatgtgctgtttgtttgtcggaatttgaatccggtgaaacgggtcgggttttacccaaatgcaaacatagttttcatactgagtgtattgatatgtggt |
13998899 |
T |
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| Q |
119 |
ttcagtctcattctacatgtccgctttgtagagcgcccgt |
158 |
Q |
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| T |
13998898 |
ttcattctcatgacacgtgtcctctttgtcgggcgcccgt |
13998859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 8434469 - 8434388
Alignment:
| Q |
68 |
ttttacccaaatgtaatcatagttttcatattgattgtattgatatgtggtttcagtctcattctacatgtccgctttgtag |
149 |
Q |
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| T |
8434469 |
ttttaccaaaatgcaatcatgggtttcatttagattgtattgatatgtggtttcaatctcattctacttgtcctctttgtag |
8434388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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