View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_31 (Length: 278)
Name: NF15167_low_31
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 24994489 - 24994729
Alignment:
| Q |
18 |
tattttgggtgttccgcatatatgcggcgtcatttgttgtgtaatttatgttttgctagtctttgttcttcttatgccgagatttagttattaataaatt |
117 |
Q |
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| T |
24994489 |
tattttgggtgttccgcatatatgcggcgtcctttgttgtgtaatttatgttttgctagtctttgttcttcttctgcagagatttaattattaataaatt |
24994588 |
T |
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| Q |
118 |
tttctgttaaagnnnnnnnnctcatttataattctatcctactcaaccttttgtttgctcttagaatacttgctcgacttgcatttctgaagtccttgat |
217 |
Q |
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| T |
24994589 |
ttactgttaaa-aaaaaaaattcatttataatcctatcctactcaaccttttatttactcttagaatacttgctcgatttgcatttgtgaagtccttgat |
24994687 |
T |
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| Q |
218 |
ggagtaatttatgtatgtctgataaaaatgtttttacaatatttt |
262 |
Q |
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| T |
24994688 |
ggagtaatttatgtatgt---ataaaaatgtttttacaatatttt |
24994729 |
T |
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