View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15167_low_4 (Length: 579)
Name: NF15167_low_4
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 288 - 563
Target Start/End: Original strand, 47626527 - 47626798
Alignment:
| Q |
288 |
tcttggatgcttacatttcctcgtcgtggtgttcgatatctgaaagggtggaggaaatgatggaattggaattatgtgcaagggattgaagggaagaagg |
387 |
Q |
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| T |
47626527 |
tcttggatgcttacatttcctcgtcgtggtgttcgatatcagaaagggtggaggaaatgatggaattggaattctgtgcaagggattgaagggaagaagg |
47626626 |
T |
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| Q |
388 |
gttaatgcaagaatgttgttggaattgaaggagtgtagagtagcctgaagatttgttggagttgtcattggaagaaattagggtttggatttcaagaatc |
487 |
Q |
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| T |
47626627 |
gttaatgcaagaatgttgttggaattgaaggagtgtagagtagcctgaagatttgttggagttgtcattggaagaaattagggtttggatttcaagaatc |
47626726 |
T |
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| Q |
488 |
tcttcttttgacattgttttgttgcagagattacaaaacgattgattaaaccctagtagtgatgagtggtggaaga |
563 |
Q |
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| T |
47626727 |
tcttcttttgacattgttttgttgcagagattacaaaac----gattaaaccctagtagtgatgagtggtggaaga |
47626798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 55 - 221
Target Start/End: Original strand, 47626289 - 47626456
Alignment:
| Q |
55 |
aattaacatcatccactgcaaaacaatnnnnnnnnn-taagcattgcataaaatcgaatcacaaagttaagaaaatagagaaaattgttacctcgaagct |
153 |
Q |
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| T |
47626289 |
aattaacatcatccactgcaaaacaatataaaaaaaataagcattgcataaaatcgaatcacaaagttaagaaaatagcgaaaattgttacctcgaagct |
47626388 |
T |
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| Q |
154 |
cagaaacaatggagggatgataaatcatgaatcccaaacatttcaagccttgtgcagctctaacaaac |
221 |
Q |
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| T |
47626389 |
cagaaacaatggagggatgataaatcatgaatcccaaacatttcaaggcttgtgcagctctaacaaac |
47626456 |
T |
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