View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_low_44 (Length: 209)

Name: NF15167_low_44
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_low_44
NF15167_low_44
[»] chr6 (6 HSPs)
chr6 (16-188)||(15602321-15602493)
chr6 (32-113)||(7956698-7956779)
chr6 (62-118)||(34434307-34434363)
chr6 (53-90)||(25329809-25329846)
chr6 (53-90)||(26198014-26198051)
chr6 (21-57)||(28633355-28633391)
[»] chr7 (4 HSPs)
chr7 (16-186)||(6343613-6343783)
chr7 (35-90)||(45976482-45976537)
chr7 (50-119)||(29557274-29557343)
chr7 (28-129)||(45165589-45165690)
[»] chr1 (3 HSPs)
chr1 (25-191)||(30712847-30713013)
chr1 (35-113)||(9991072-9991150)
chr1 (62-118)||(45270284-45270340)
[»] chr4 (6 HSPs)
chr4 (21-191)||(54684612-54684782)
chr4 (28-117)||(40688076-40688165)
chr4 (28-115)||(22877509-22877596)
chr4 (62-111)||(19120120-19120169)
chr4 (35-113)||(43127636-43127714)
chr4 (28-129)||(19163207-19163307)
[»] chr5 (4 HSPs)
chr5 (28-174)||(35837218-35837364)
chr5 (64-114)||(9724726-9724776)
chr5 (28-138)||(36255788-36255898)
chr5 (62-118)||(25671995-25672051)
[»] chr2 (6 HSPs)
chr2 (16-63)||(36931182-36931229)
chr2 (64-114)||(11579585-11579635)
chr2 (28-117)||(6727819-6727908)
chr2 (28-117)||(13415692-13415781)
chr2 (64-118)||(43724183-43724237)
chr2 (62-114)||(18634945-18634997)
[»] chr3 (5 HSPs)
chr3 (32-121)||(3168923-3169012)
chr3 (64-116)||(52251167-52251219)
chr3 (47-117)||(8129979-8130049)
chr3 (48-117)||(6985931-6986000)
chr3 (62-114)||(53941362-53941414)
[»] scaffold0750 (1 HSPs)
scaffold0750 (28-117)||(6060-6149)
[»] scaffold0124 (1 HSPs)
scaffold0124 (28-117)||(22422-22511)
[»] scaffold0024 (1 HSPs)
scaffold0024 (35-113)||(87248-87326)
[»] chr8 (3 HSPs)
chr8 (28-117)||(4310876-4310965)
chr8 (64-116)||(35029267-35029319)
chr8 (41-113)||(42649241-42649313)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 15602321 - 15602493
Alignment:
Q  16 aatatcacgggttgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaacc 115  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15602321 aataccacgggttgctaagttagacttagtgggaaatcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatggttatgccaaacc 15602420  T
Q  116 aaatcgtcccaaagcatatcttgcggaacctcctgattagtgagcatatcatacacaccgcaaaccgagtacc 188  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  15602421 aaatcgtcccaaagcatatcctgcggaatctcctgattagtgagcatatcatacacaccgcgaaccgagtacc 15602493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 7956779 - 7956698
Alignment:
Q  32 aagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaa 113  Q
    |||||||| ||||| ||||| |||||||| ||||||||||||||||| |  |||||||| |  ||||| || ||||||||||    
T  7956779 aagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaa 7956698  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 34434307 - 34434363
Alignment:
Q  62 agcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaa 118  Q
    ||||||| |||||||||||| || || |||| ||||||||| |||||||||||||||    
T  34434307 agcaacctccaagcaaaaatagagactttaagcggaacatggttatgccaaaccaaa 34434363  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 25329809 - 25329846
Alignment:
Q  53 cgatcacgaagcaaccgccaagcaaaaatggacacctt 90  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  25329809 cgatcacgaagcaaccgccacgcaaaaatggagacctt 25329846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 26198051 - 26198014
Alignment:
Q  53 cgatcacgaagcaaccgccaagcaaaaatggacacctt 90  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  26198051 cgatcacgaagcaaccgccacgcaaaaatggagacctt 26198014  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 28633391 - 28633355
Alignment:
Q  21 cacgggttgctaagttagacttagtgggaagtcgatc 57  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  28633391 cacggtttgctaaattagacttagtgggaagtcgatc 28633355  T

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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 6343783 - 6343613
Alignment:
Q  16 aatatcacgggttgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaacc 115  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6343783 aataccacaggttgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatgcttatgccaaacc 6343684  T
Q  116 aaatcgtcccaaagcatatcttgcggaacctcctgattagtgagcatatcatacacaccgcaaaccgagta 186  Q
    ||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||| | |||||||||    
T  6343683 aaatcgtccaaacgcatatcctgcggaatctcctgattagtgagcatatcatacacaccacgaaccgagta 6343613  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 45976537 - 45976482
Alignment:
Q  35 ttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacacctt 90  Q
    ||||| ||||| ||||| ||||||| ||||| ||||||||||||||| ||||||||    
T  45976537 ttagatttagtaggaaggcgatcacaaagcagccgccaagcaaaaatagacacctt 45976482  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 29557274 - 29557343
Alignment:
Q  50 agtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaat 119  Q
    ||||| |||||||| | |||||||||||||||| | ||||| | ||||||||| || ||||||| |||||    
T  29557274 agtcggtcacgaagtagccgccaagcaaaaatgaaaaccttgagcggaacatgtttgtgccaaatcaaat 29557343  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 45165690 - 45165589
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatcgtcccaa 127  Q
    |||||| |||||||| || ||||||| ||| |||| ||| | ||||||||||||  |||||||||  ||||| |  || |||||||||||||| || |||    
T  45165690 tgctaaattagactttgtaggaagtctatctcgaatcaatctccaagcaaaaataaacaccttaaggggaacctctttgtgccaaaccaaatcttcacaa 45165591  T
Q  128 ag 129  Q
    ||    
T  45165590 ag 45165589  T

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Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 30713013 - 30712847
Alignment:
Q  25 ggttgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatcgtcc 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||    
T  30713013 ggttactaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcgaaaatagacaccttaagcggaacatgcttatgccaaaccaaatcatcc 30712914  T
Q  125 caaagcatatcttgcggaacctcctgattagtgagcatatcatacacaccgcaaaccgagtacccat 191  Q
    |||| |||||| ||||| | |||||||||||||||||||||||||||||| | ||||||||||||||    
T  30712913 caaaccatatcctgcggtatctcctgattagtgagcatatcatacacacctcgaaccgagtacccat 30712847  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 9991072 - 9991150
Alignment:
Q  35 ttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaa 113  Q
    ||||| ||||| |||||  |||||||||||| ||||||||||||||| | |||||||| |||||| || ||||||||||    
T  9991072 ttagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 45270284 - 45270340
Alignment:
Q  62 agcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaa 118  Q
    ||||||| |||||||||||| || ||||||| ||||||||| || ||||||||||||    
T  45270284 agcaacctccaagcaaaaatagagaccttaagcggaacatggttgtgccaaaccaaa 45270340  T

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Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 54684612 - 54684782
Alignment:
Q  21 cacgggttgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||||    
T  54684612 cacgggttgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcgaaaatagacaccttaagcggaacatgcttatgccaaatcaaatc 54684711  T
Q  121 gtcccaaagcatatcttgcggaacctcctgattagtgagcatatcatacacaccgcaaaccgagtacccat 191  Q
     ||||||| |||||| || || | |||| ||||||||||||||||||||||||| | ||||||||||||||    
T  54684712 atcccaaaacatatcctgtggtatctcccgattagtgagcatatcatacacacctcgaaccgagtacccat 54684782  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 40688076 - 40688165
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| |||||||| || ||||||| ||| |||| ||||| |||||||||||| ||||||||||  ||||| || || |||||||||||    
T  40688076 tgctaaattagactttgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaa 40688165  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 22877596 - 22877509
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaacc 115  Q
    |||||| |||||||| || ||||||| ||| |||| ||||| |||||||||||| ||||||||||  | |||||| || |||||||||    
T  22877596 tgctaaattagactttgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttaagggaaacatgtttgtgccaaacc 22877509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 19120120 - 19120169
Alignment:
Q  62 agcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgcca 111  Q
    ||||||||||||||||||||||| ||||| || ||||| |||||||||||    
T  19120120 agcaaccgccaagcaaaaatggaaaccttcataggaacctgcttatgcca 19120169  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 43127714 - 43127636
Alignment:
Q  35 ttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaa 113  Q
    ||||| ||||| ||||| | ||||||||||||||||||| |||| |  |||||||| |  |||||||| ||||||||||    
T  43127714 ttagatttagtaggaaggcaatcacgaagcaaccgccaaacaaatacagacacctttagaggaacatgtttatgccaaa 43127636  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 19163307 - 19163207
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatcgtcccaa 127  Q
    |||||| |||||||| || ||||||| ||| |||| ||| | |||||||||||| |||| |||||  ||||| || || |||||||||||||| || |||    
T  19163307 tgctaaattagactttgtaggaagtctatctcgaatcaatctccaagcaaaaatagaca-cttaaggggaacctgtttgtgccaaaccaaatcttcacaa 19163209  T
Q  128 ag 129  Q
    ||    
T  19163208 ag 19163207  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 35837218 - 35837364
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatcgtcccaa 127  Q
    |||||| |||||||| || ||||||||||| |||| ||||| |||||||||||| |||||||||| |||||| || || ||||||||||| || || |||    
T  35837218 tgctaaattagactttgtaggaagtcgatcgcgaatcaacctccaagcaaaaatagacaccttaagcggaacctgtttgtgccaaaccaattcatcgcaa 35837317  T
Q  128 agcatatcttgcggaacctcctgattagtgagcatatcatacacacc 174  Q
    ||  |||| ||| | |  ||||||||||| |||||| ||||| ||||    
T  35837318 agtctatcctgctgcaattcctgattagtaagcatagcatacgcacc 35837364  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 9724776 - 9724726
Alignment:
Q  64 caaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaac 114  Q
    |||||||||||||||||| || |||||||  |||||||| |||||||||||    
T  9724776 caaccgccaagcaaaaattgagaccttaagtggaacatgtttatgccaaac 9724726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 36255788 - 36255898
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatcgtcccaa 127  Q
    |||||| |||||||| || || |||| ||| |||| ||| | |||||||||||| ||||||||||  ||||| || || ||||||||||| || || |||    
T  36255788 tgctaaattagactttgtagggagtctatctcgaatcaatctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaattcttcacaa 36255887  T
Q  128 agcatatcttg 138  Q
    ||  |||||||    
T  36255888 agactatcttg 36255898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 25671995 - 25672051
Alignment:
Q  62 agcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaa 118  Q
    ||||||| |||||||||||| || ||||||| || |||||| || ||||||||||||    
T  25671995 agcaacctccaagcaaaaatagagaccttaagcgtaacatggttgtgccaaaccaaa 25672051  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 36931182 - 36931229
Alignment:
Q  16 aatatcacgggttgctaagttagacttagtgggaagtcgatcacgaag 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  36931182 aataccacgggttgctaagttagacttagtgggaagtcgatcacgaag 36931229  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 11579635 - 11579585
Alignment:
Q  64 caaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaac 114  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||||||    
T  11579635 caaccgccaagcaagaatggacaccttcattggaacatgcttatgccaaac 11579585  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 6727908 - 6727819
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| |||||||| || ||||||| ||| |||| ||||| |||||||||||| ||||||||||  ||||| || || |||||||||||    
T  6727908 tgctaaattagactttgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaa 6727819  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 13415692 - 13415781
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| |||||| | || ||||||| ||| |||| ||||| ||||| |||||| ||||||||||  |||||||| || |||||||||||    
T  13415692 tgctaaattagacattgtaggaagtctatctcgaatcaacctccaagaaaaaatagacaccttaaggggaacatgtttgtgccaaaccaa 13415781  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 43724237 - 43724183
Alignment:
Q  64 caaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaa 118  Q
    ||||| |||||||||||| || ||||||| ||||||||| || ||||||||||||    
T  43724237 caacctccaagcaaaaattgagaccttaagcggaacatgattgtgccaaaccaaa 43724183  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 18634945 - 18634997
Alignment:
Q  62 agcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaac 114  Q
    ||||| || |||||||||||||| ||||| || ||||| ||||||||||||||    
T  18634945 agcaatcgtcaagcaaaaatggaaaccttcataggaacctgcttatgccaaac 18634997  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 3168923 - 3169012
Alignment:
Q  32 aagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaaatcg 121  Q
    ||||||| |||||| ||||| ||||||||||||| |||||| ||||  |||||||||||||  ||||| || || ||||||| |||||||    
T  3168923 aagttagtcttagtaggaaggcgatcacgaagcatccgccacgcaattatggacaccttaagtggaacctgtttgtgccaaatcaaatcg 3169012  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 52251219 - 52251167
Alignment:
Q  64 caaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaacca 116  Q
    ||||| ||||||||||||||| |||||||  |||||||| |||||||||||||    
T  52251219 caacctccaagcaaaaatggaaaccttaagtggaacatgtttatgccaaacca 52251167  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 8129979 - 8130049
Alignment:
Q  47 ggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    ||||||| ||| |||| ||||| |||||||||||| |||||||| |  |||||||| || |||||||||||    
T  8129979 ggaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa 8130049  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 6985931 - 6986000
Alignment:
Q  48 gaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| ||| |||| ||||| |||||||||||| |||||||| |  |||||||| || |||||||||||    
T  6985931 gaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa 6986000  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 53941362 - 53941414
Alignment:
Q  62 agcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaac 114  Q
    ||||||||||| ||||||||||| ||||| |  ||||| ||||||||||||||    
T  53941362 agcaaccgccatgcaaaaatggataccttcagaggaacctgcttatgccaaac 53941414  T

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Target: scaffold0750 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0750
Description:

Target: scaffold0750; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 6060 - 6149
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| |||||| | || ||||||| ||| |||| ||||| |||||||||||| |||||||| |  |||||||| || |||||||||||    
T  6060 tgctaaattagacattgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa 6149  T

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Target: scaffold0124 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 22422 - 22511
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| |||||| | || ||||||| ||| |||| ||||| |||||||||||| |||||||| |  |||||||| || |||||||||||    
T  22422 tgctaaattagacattgtaggaagtctatctcgaatcaacctccaagcaaaaatagacaccttgaggggaacatgtttgtgccaaaccaa 22511  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 87326 - 87248
Alignment:
Q  35 ttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaa 113  Q
    ||||| ||||| ||||| ||||||| ||||| ||  ||||||||||| |||||||||| |||||| || || |||||||    
T  87326 ttagatttagtaggaaggcgatcacaaagcagccatcaagcaaaaatagacaccttaagcggaacctgtttgtgccaaa 87248  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 4310965 - 4310876
Alignment:
Q  28 tgctaagttagacttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaaccaa 117  Q
    |||||| |||||||| || ||||||| ||| | || ||| | |||||||||||| ||||||||||  ||||| || || |||||||||||    
T  4310965 tgctaaattagactttgtaggaagtctatctcaaatcaatctccaagcaaaaatagacaccttaaggggaacctgtttgtgccaaaccaa 4310876  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 35029267 - 35029319
Alignment:
Q  64 caaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaacca 116  Q
    ||||| |||||||||||| || |||||||  |||||||| |||||||||||||    
T  35029267 caacctccaagcaaaaatagaaaccttaagtggaacatgtttatgccaaacca 35029319  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 42649241 - 42649313
Alignment:
Q  41 ttagtgggaagtcgatcacgaagcaaccgccaagcaaaaatggacaccttaatcggaacatgcttatgccaaa 113  Q
    ||||| ||||| |||||  ||||||||||||| || ||||| |||||||||| ||| || || ||||||||||    
T  42649241 ttagtaggaagacgatcctgaagcaaccgccaggcgaaaatagacaccttaagcggtacctgtttatgccaaa 42649313  T

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