View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15167_low_45 (Length: 204)

Name: NF15167_low_45
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15167_low_45
NF15167_low_45
[»] chr5 (21 HSPs)
chr5 (1-195)||(40753218-40753414)
chr5 (1-103)||(1475694-1475796)
chr5 (1-103)||(32129673-32129775)
chr5 (1-104)||(11775708-11775812)
chr5 (1-96)||(39902339-39902434)
chr5 (1-103)||(4895791-4895893)
chr5 (1-103)||(13032036-13032137)
chr5 (1-103)||(35660665-35660767)
chr5 (1-103)||(37266648-37266750)
chr5 (1-102)||(4592719-4592819)
chr5 (1-103)||(14349721-14349822)
chr5 (1-96)||(18625477-18625572)
chr5 (1-103)||(8441027-8441129)
chr5 (3-101)||(10173867-10173961)
chr5 (1-105)||(34827109-34827211)
chr5 (1-70)||(32793324-32793393)
chr5 (25-77)||(43309061-43309113)
chr5 (6-101)||(3057215-3057310)
chr5 (1-39)||(28142831-28142870)
chr5 (22-87)||(16500484-16500549)
chr5 (32-76)||(30355212-30355256)
[»] chr8 (19 HSPs)
chr8 (1-104)||(41511178-41511281)
chr8 (1-103)||(30426725-30426827)
chr8 (1-103)||(36991273-36991375)
chr8 (1-103)||(10652673-10652776)
chr8 (1-105)||(28069634-28069738)
chr8 (1-103)||(10672568-10672670)
chr8 (1-97)||(24101939-24102035)
chr8 (3-103)||(28318960-28319060)
chr8 (2-95)||(8412179-8412272)
chr8 (1-102)||(40695303-40695404)
chr8 (1-105)||(12177620-12177724)
chr8 (1-105)||(12422048-12422152)
chr8 (6-101)||(27490067-27490162)
chr8 (1-103)||(44859223-44859324)
chr8 (5-95)||(45113195-45113285)
chr8 (35-103)||(5033023-5033091)
chr8 (8-86)||(37966505-37966583)
chr8 (36-101)||(39143443-39143508)
chr8 (47-95)||(16999758-16999806)
[»] chr4 (27 HSPs)
chr4 (1-104)||(12153087-12153190)
chr4 (8-104)||(52018699-52018795)
chr4 (1-104)||(12241464-12241567)
chr4 (1-103)||(34778338-34778440)
chr4 (1-105)||(56558194-56558298)
chr4 (1-104)||(5763218-5763321)
chr4 (1-103)||(19901974-19902076)
chr4 (5-104)||(18207100-18207199)
chr4 (1-103)||(33247186-33247286)
chr4 (1-96)||(38079776-38079871)
chr4 (1-103)||(23610559-23610661)
chr4 (1-103)||(39862434-39862536)
chr4 (2-103)||(17080697-17080798)
chr4 (2-84)||(3952227-3952309)
chr4 (1-103)||(47922131-47922233)
chr4 (1-103)||(5416521-5416625)
chr4 (13-92)||(12312571-12312650)
chr4 (1-92)||(33262608-33262699)
chr4 (1-101)||(3326435-3326536)
chr4 (4-96)||(24073541-24073632)
chr4 (3-68)||(43447638-43447704)
chr4 (5-62)||(30567859-30567916)
chr4 (13-89)||(26428574-26428650)
chr4 (47-101)||(25442277-25442331)
chr4 (1-95)||(31862276-31862370)
chr4 (5-41)||(12312536-12312572)
chr4 (1-61)||(33841860-33841920)
[»] chr1 (20 HSPs)
chr1 (1-103)||(12380966-12381068)
chr1 (1-103)||(12385033-12385135)
chr1 (1-103)||(50484303-50484405)
chr1 (1-103)||(40328193-40328297)
chr1 (1-103)||(7841766-7841868)
chr1 (1-103)||(12151684-12151786)
chr1 (5-103)||(45977939-45978037)
chr1 (3-93)||(50294121-50294211)
chr1 (1-105)||(23862011-23862116)
chr1 (1-103)||(48327209-48327312)
chr1 (1-96)||(2845189-2845285)
chr1 (5-95)||(18976365-18976452)
chr1 (56-103)||(35977883-35977930)
chr1 (36-101)||(10646833-10646898)
chr1 (5-70)||(45970796-45970861)
chr1 (1-95)||(23916013-23916105)
chr1 (1-96)||(46608433-46608523)
chr1 (1-101)||(5047437-5047536)
chr1 (12-61)||(40988674-40988723)
chr1 (3-61)||(19910511-19910568)
[»] chr7 (19 HSPs)
chr7 (1-103)||(21151069-21151171)
chr7 (1-103)||(12139245-12139345)
chr7 (1-100)||(16366438-16366537)
chr7 (1-101)||(47226130-47226229)
chr7 (1-96)||(18198180-18198275)
chr7 (1-91)||(7362497-7362587)
chr7 (1-103)||(25084784-25084886)
chr7 (5-103)||(45260487-45260586)
chr7 (4-103)||(44647882-44647978)
chr7 (1-92)||(9559110-9559201)
chr7 (1-96)||(4888391-4888486)
chr7 (1-101)||(29630967-29631067)
chr7 (5-95)||(33450431-33450521)
chr7 (1-61)||(40019640-40019700)
chr7 (5-95)||(47500343-47500433)
chr7 (1-96)||(32915883-32915975)
chr7 (5-40)||(39855873-39855908)
chr7 (3-101)||(30153240-30153337)
chr7 (5-95)||(34986006-34986095)
[»] chr6 (17 HSPs)
chr6 (1-103)||(29698080-29698182)
chr6 (1-103)||(1249202-1249304)
chr6 (1-103)||(4804365-4804467)
chr6 (1-103)||(7162001-7162103)
chr6 (1-103)||(32737791-32737893)
chr6 (1-103)||(21159425-21159523)
chr6 (1-76)||(17944106-17944181)
chr6 (1-71)||(12412586-12412656)
chr6 (9-76)||(30460764-30460831)
chr6 (1-72)||(1518334-1518405)
chr6 (1-96)||(27826462-27826557)
chr6 (1-70)||(1516245-1516314)
chr6 (1-103)||(13089805-13089899)
chr6 (5-95)||(227624-227714)
chr6 (49-95)||(13888617-13888663)
chr6 (1-61)||(2800667-2800727)
chr6 (25-61)||(17398774-17398810)
[»] chr2 (12 HSPs)
chr2 (1-104)||(35316741-35316844)
chr2 (1-96)||(39465699-39465794)
chr2 (6-103)||(41983401-41983497)
chr2 (1-96)||(28564815-28564911)
chr2 (1-96)||(13238605-13238700)
chr2 (6-92)||(374499-374585)
chr2 (1-104)||(23259543-23259646)
chr2 (1-103)||(10877619-10877722)
chr2 (1-103)||(45625118-45625216)
chr2 (15-101)||(2061296-2061382)
chr2 (7-61)||(12949429-12949482)
chr2 (1-33)||(21454550-21454582)
[»] scaffold0250 (2 HSPs)
scaffold0250 (1-103)||(7064-7166)
scaffold0250 (107-168)||(6489-6550)
[»] scaffold0012 (1 HSPs)
scaffold0012 (5-103)||(207980-208078)
[»] chr3 (15 HSPs)
chr3 (1-103)||(2229900-2230002)
chr3 (1-101)||(34373750-34373850)
chr3 (1-103)||(43720003-43720105)
chr3 (3-103)||(40851690-40851791)
chr3 (1-91)||(34373641-34373731)
chr3 (1-103)||(12402883-12402985)
chr3 (1-76)||(27033595-27033670)
chr3 (1-103)||(19830487-19830591)
chr3 (1-101)||(550872-550972)
chr3 (3-91)||(46167322-46167410)
chr3 (5-95)||(48084744-48084834)
chr3 (1-92)||(52859436-52859528)
chr3 (9-70)||(566838-566898)
chr3 (5-96)||(2310235-2310324)
chr3 (25-101)||(32577451-32577526)
[»] scaffold0035 (1 HSPs)
scaffold0035 (5-103)||(16457-16555)
[»] scaffold0006 (1 HSPs)
scaffold0006 (5-103)||(73900-73998)
[»] scaffold0456 (1 HSPs)
scaffold0456 (1-71)||(13645-13715)
[»] scaffold0009 (1 HSPs)
scaffold0009 (3-103)||(6493-6585)
[»] scaffold0126 (1 HSPs)
scaffold0126 (9-96)||(22506-22593)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-96)||(9257-9349)
[»] scaffold0468 (1 HSPs)
scaffold0468 (5-99)||(5531-5625)
[»] scaffold0252 (1 HSPs)
scaffold0252 (2-71)||(10531-10600)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 40753218 - 40753414
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40753218 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatggagaagcacataaatggagaggatcctaa 40753317  T
Q  101 ccctagataatgaggccaaagtatagaaatggagaaggcaaccaaatgcatacccttg--tctcactatctatccccgaagcaagaaatataacaca 195  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||    
T  40753318 ccctagataatgaggccaaagtatagaaatggagaaggaaaccaaatgcatacccttgtctctcactatctatccccgaagcaagaaatacaacaca 40753414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1475694 - 1475796
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||| || |||||||||| ||||||||||||    
T  1475694 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatcactccaaattgaagaaatgaaaaaacacataaatgaagaggatcctaa 1475793  T
Q  101 ccc 103  Q
    |||    
T  1475794 ccc 1475796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32129673 - 32129775
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||| |||| || ||||||||||||||||||||    
T  32129673 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaa 32129772  T
Q  101 ccc 103  Q
    |||    
T  32129773 ccc 32129775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 11775812 - 11775708
Alignment:
Q  1 ccaccatcattaattatattttactttttt-caagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    ||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||    
T  11775812 ccaccgtcattaattatattttactttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatctta 11775713  T
Q  100 accct 104  Q
    |||||    
T  11775712 accct 11775708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39902434 - 39902339
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  39902434 ccaccatcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 39902339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4895791 - 4895893
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||| |||| || ||||||| ||||||||||||    
T  4895791 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatgaagaggatcctaa 4895890  T
Q  101 ccc 103  Q
    |||    
T  4895891 ccc 4895893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13032137 - 13032036
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  13032137 ccaccatcattaattatattttattttttt-aagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 13032039  T
Q  101 ccc 103  Q
    |||    
T  13032038 ccc 13032036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 35660665 - 35660767
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||| | |||| ||||||||| ||||||||| |||    
T  35660665 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaacggagaaacacataaatagagaggatcttaa 35660764  T
Q  101 ccc 103  Q
    |||    
T  35660765 ccc 35660767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 37266750 - 37266648
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||| | || ||| |||||||||||||||||||    
T  37266750 ccaccatcattaattatattttagttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacgtaaatggagaggatcctaa 37266651  T
Q  101 ccc 103  Q
    |||    
T  37266650 ccc 37266648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4592819 - 4592719
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||| |||| |||||||||||||||||| ||||    
T  4592819 ccaccatcattaattatattttacttttttcaatattttatgtg-tattatctctccaaattgaagaaatggagaaacacataaatggagaggattctaa 4592721  T
Q  101 cc 102  Q
    ||    
T  4592720 cc 4592719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 14349822 - 14349721
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||| |||| |||||||||||||| |||| |||    
T  14349822 ccaccatcattaattatattttacttttttcaagattt-atgtgtctttatctttccaaattaaagaaatggagaaacacataaatggagaagatcttaa 14349724  T
Q  101 ccc 103  Q
    |||    
T  14349723 ccc 14349721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 18625477 - 18625572
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| ||||||||  | || |||||||||||||||||||    
T  18625477 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatgaaagaaattgaaaaacacataaatggagaggatc 18625572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8441027 - 8441129
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||||| | |||| | |||| |||||||||||||| ||||||||    
T  8441027 ccaccatcattaattatattttactttttttaagattgtatgtgtatttatctctccaaattgatgaaacggagaaacacataaatggagatgatcctaa 8441126  T
Q  101 ccc 103  Q
    |||    
T  8441127 ccc 8441129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 10173961 - 10173867
Alignment:
Q  3 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||||||||| ||||||||||||||| |||    |||  ||||||||||||||| || |||||| ||||| |||||||||||||||||| ||||    
T  10173961 accatcattaattattttttacttttttcaaaatt----gtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggatcttaac 10173867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34827211 - 34827109
Alignment:
Q  1 ccaccatcattaattatattttactt-ttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    |||||||| ||||||||||||||||| ||||||| ||||  ||||  ||||||||| |||||| |||||||| | || || |||||||| ||||||||||    
T  34827211 ccaccatctttaattatattttactttttttcaaaattt--tgtgtctttatctcttcaaatttaagaaatgga-aaacatataaatggtgaggatccta 34827115  T
Q  100 acccta 105  Q
    ||||||    
T  34827114 acccta 34827109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32793393 - 32793324
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaat 70  Q
    |||| ||||| ||||||||||||||||||||||||||||||  |  ||||||||| ||||| ||||||||    
T  32793393 ccacaatcatcaattatattttacttttttcaagattttattcgtctttatctcttcaaatgaaagaaat 32793324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 43309113 - 43309061
Alignment:
Q  25 ttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaag 77  Q
    ||||||||||||||||||||  ||||||||| |||||| |||||||| |||||    
T  43309113 ttttttcaagattttatgtgtctttatctcttcaaattgaagaaatggagaag 43309061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 3057215 - 3057310
Alignment:
Q  6 atcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||||||||||||||||||| || | |||| |||  ||||||||| |||||  |||||||| |||   |||||| |||||| |||| ||||    
T  3057215 atcattaattatattttacttttttaaaaaatttaagtgtctttatctcttcaaatagaagaaatggagagagacataattggagaagatcttaac 3057310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28142831 - 28142870
Alignment:
Q  1 ccaccatcattaattatattttac-ttttttcaagatttt 39  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28142831 ccaccatcattaattatattttactttttttcaagatttt 28142870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 16500549 - 16500484
Alignment:
Q  22 tacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatg 87  Q
    ||||||||||||  |||| |||| | |||||||||||||| ||||||||| ||| | |||||||||    
T  16500549 tacttttttcaaacttttttgtgttcttatctctccaaatgaaagaaatggagaggaacataaatg 16500484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 30355256 - 30355212
Alignment:
Q  32 aagattttatgtgcttttatctctccaaattaaagaaatgaagaa 76  Q
    |||||||| ||||  |||||||||||||||||||||||| |||||    
T  30355256 aagattttttgtgtctttatctctccaaattaaagaaataaagaa 30355212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41511281 - 41511178
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | || |||||||||||||||||||||||    
T  41511281 ccaccatcattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaa 41511182  T
Q  101 ccct 104  Q
    ||||    
T  41511181 ccct 41511178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 30426725 - 30426827
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| | || |||||||||||||||||||||||    
T  30426725 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaa 30426824  T
Q  101 ccc 103  Q
    |||    
T  30426825 ccc 30426827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36991375 - 36991273
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||| |||  |||||||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  36991375 ccaccatcattaattatatttgacttttttcaagattttacgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaa 36991276  T
Q  101 ccc 103  Q
    |||    
T  36991275 ccc 36991273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 10652673 - 10652776
Alignment:
Q  1 ccaccatcattaattatatttt-actttttt-caagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcct 98  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |    
T  10652673 ccaccatcattaattatatttttactttttttcaaaattttatgtg-ttttatctctccaaattgaagaaatgaagaaacacataaatggagaggatctt 10652771  T
Q  99 aaccc 103  Q
    |||||    
T  10652772 aaccc 10652776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28069738 - 28069634
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||  |||||||  | || ||||||||||||||||||| | |    
T  28069738 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgaaaaacacataaatggagaggatcttca 28069639  T
Q  101 cccta 105  Q
    |||||    
T  28069638 cccta 28069634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 10672568 - 10672670
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||  |||| || |||||||||  ||||||||||||||||| || |||||||||| |||||||||| ||||||| ||||    
T  10672568 ccaccatcattaattatattttaccctttttaaaattttatgtatttttatctctccaaattgaataaatgaagaaacacataaatgaagaggatactaa 10672667  T
Q  101 ccc 103  Q
    |||    
T  10672668 ccc 10672670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24102035 - 24101939
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcc 97  Q
    ||||||||||||||||||||| | |||||||||||||||| |||  ||||||||||||||||||| ||||  | || ||||||||||||||||||||    
T  24102035 ccaccatcattaattatatttcatttttttcaagattttacgtgtctttatctctccaaattaaaaaaatagaaaaacacataaatggagaggatcc 24101939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 28318960 - 28319060
Alignment:
Q  3 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaacc 102  Q
    |||||||||||||||||||||||||||| || ||||||||||  ||| |||||||||||| |||||||| |||| ||| ||||||||||  |||||||||    
T  28318960 accatcattaattatattttactttttttaaaattttatgtgtctttgtctctccaaattgaagaaatggagaaacacgtaaatggagaaaatcctaacc 28319059  T
Q  103 c 103  Q
    |    
T  28319060 c 28319060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 8412272 - 8412179
Alignment:
Q  2 caccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||| |||||||||||||||||||||||| ||||||||||  |||||||||| ||||  || ||||||||||  |||||||||||||||||    
T  8412272 caccatcgttaattatattttacttttttcaatattttatgtgtatttatctctctaaatggaaaaaatgaagaaaaacataaatggagaggat 8412179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 40695303 - 40695404
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||   |||||| ||||||||| |||||||| | ||  |||||||| | |||||||||||    
T  40695303 ccaccatcattagttatattttacttttttcaagattttatgtttctttatccctccaaattgaagaaatggataaatacataaatagggaggatcctaa 40695402  T
Q  101 cc 102  Q
    ||    
T  40695403 cc 40695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12177620 - 12177724
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||| |||||||||| ||||||||||||||||  ||   ||||||||  ||||| |||||||| |||| ||||||||| |||||||||||||    
T  12177620 ccaccatcattagttatattttatttttttcaagattttaattgtccttatctctttaaattgaagaaatggagaaacacataaatagagaggatcctaa 12177719  T
Q  101 cccta 105  Q
    |||||    
T  12177720 cccta 12177724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12422048 - 12422152
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||| |||||||||| ||||||||||||||||  ||   ||||||||  ||||| |||||||| |||| ||||||||| |||||||||||||    
T  12422048 ccaccatcattagttatattttatttttttcaagattttaattgtccttatctctttaaattgaagaaatggagaaacacataaatagagaggatcctaa 12422147  T
Q  101 cccta 105  Q
    |||||    
T  12422148 cccta 12422152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 27490067 - 27490162
Alignment:
Q  6 atcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||||||||||||||||||||||||||||||||  |||| ||||| |||||  |||||||  ||||  ||||||||||||| |||| ||||    
T  27490067 atcattaattatattttacttttttcaagattttatgtatttttgtctcttcaaatggaagaaattgagaaagacataaatggagaagatcttaac 27490162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44859223 - 44859324
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| |||||  || |||| | |||  ||||||||||||||||||||||| | | || ||| |||||||||| ||||||||    
T  44859223 ccaccatcattaattatattttattttttaaaaaatttcacgtgtctttatctctccaaattaaagaaaaggaaaaacacgtaaatggaga-gatcctaa 44859321  T
Q  101 ccc 103  Q
    |||    
T  44859322 ccc 44859324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 45113285 - 45113195
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||| ||||| ||||||||| ||||||||||  | |||||||||||||   | ||||||||||| | |||||||||||||||    
T  45113285 catcattaattattttttatttttttcaaaattttatgtgtctatatctctccaaatggtaaaaatgaagaaggatataaatggagaggat 45113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 5033091 - 5033023
Alignment:
Q  35 attttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    ||||||||||  |||||||||||||||| |||||||| |||| || |||||||||||||||| ||||||    
T  5033091 attttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaaccc 5033023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 37966505 - 37966583
Alignment:
Q  8 cattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaat 86  Q
    ||||||||||||||||||||||| ||  ||||||||   ||||||||||||||| ||||||||| ||||  ||||||||    
T  37966505 cattaattatattttactttttttaaatttttatgtatctttatctctccaaataaaagaaatggagaaagacataaat 37966583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 39143508 - 39143443
Alignment:
Q  36 ttttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    |||| |||| ||||| |||||||||| ||||||||| ||||  |||| |||| |||||||||||||    
T  39143508 ttttttgtgtttttacctctccaaataaaagaaatggagaaaaacattaatgaagaggatcctaac 39143443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 16999806 - 16999758
Alignment:
Q  47 tttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||||  |||||||| |||| ||| |||||||||||||||    
T  16999806 tttatctctccaaaagaaagaaataaagatgcatataaatggagaggat 16999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12153190 - 12153087
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  12153190 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 12153091  T
Q  101 ccct 104  Q
    ||||    
T  12153090 ccct 12153087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 52018795 - 52018699
Alignment:
Q  8 cattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccct 104  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||    
T  52018795 cattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccct 52018699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 12241464 - 12241567
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  12241464 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaa 12241563  T
Q  101 ccct 104  Q
    ||||    
T  12241564 ccct 12241567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34778440 - 34778338
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||| |||| |||||||||||||||||| ||||    
T  34778440 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccacattgaagaaatggagaaacacataaatggagaggattctaa 34778341  T
Q  101 ccc 103  Q
    |||    
T  34778340 ccc 34778338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 56558298 - 56558194
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||  |||| || ||||||||||||||||||||    
T  56558298 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacatataaatggagaggatcctaa 56558199  T
Q  101 cccta 105  Q
    |||||    
T  56558198 cccta 56558194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 5763218 - 5763321
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||| |||| || ||||||||||| ||||||||    
T  5763218 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagatgatcctaa 5763317  T
Q  101 ccct 104  Q
    ||||    
T  5763318 ccct 5763321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19901974 - 19902076
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||  |||| ||||||||||||||||||| |||    
T  19901974 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatggagaggatcttaa 19902073  T
Q  101 ccc 103  Q
    |||    
T  19902074 ccc 19902076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 18207100 - 18207199
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccct 104  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||| |||||||  |||| |||||||||||||||||||||||||||    
T  18207100 catcattaattatattttacctttttcaagattttatgtgtctttatctttccaaattgaagaaattgagaaacacataaatggagaggatcctaaccct 18207199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33247186 - 33247286
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| |||||||  |||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  33247186 ccaccatcattaattatattttatttttttc--gattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 33247283  T
Q  101 ccc 103  Q
    |||    
T  33247284 ccc 33247286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38079776 - 38079871
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||| |||| | |||||||||||||||||    
T  38079776 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaaaaaatggagaaacgcataaatggagaggatc 38079871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23610661 - 23610559
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||| |||||||| |||| || |||||||||||||||| |||    
T  23610661 ccaccatcattaaatatattttacttttttcaagattttatgtatctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaa 23610562  T
Q  101 ccc 103  Q
    |||    
T  23610561 ccc 23610559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 39862536 - 39862434
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||   |||| |||||||||| ||||||||||||    
T  39862536 ccaccatcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaaatgagaaacacataaatgaagaggatcctaa 39862437  T
Q  101 ccc 103  Q
    |||    
T  39862436 ccc 39862434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 17080697 - 17080798
Alignment:
Q  2 caccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||  |||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||    
T  17080697 caccatcattcattatattttactttttccaagattttatctgtctttatctctccaaattgaagaaatggagaaacacataaatggaggggatcctaac 17080796  T
Q  102 cc 103  Q
    ||    
T  17080797 cc 17080798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 3952227 - 3952309
Alignment:
Q  2 caccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataa 84  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||||    
T  3952227 caccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataa 3952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 47922131 - 47922233
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||| ||||||||| ||||||||| |||||| |||  |||||||||| ||||| |||||||| |||| ||||||||| |||||||||||||    
T  47922131 ccaccatcattaaatatattttatttttttcaatattttacgtgtctttatctctctaaattgaagaaatggagaaacacataaattgagaggatcctaa 47922230  T
Q  101 ccc 103  Q
    |||    
T  47922231 ccc 47922233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 5416521 - 5416625
Alignment:
Q  1 ccaccatcattaattatattttacttttttc--aagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcct 98  Q
    ||||||||||||||||||||||||||||||   |||||||||||||  ||||||| |||||||| |||||||| |||| ||||||||| |||||||| ||    
T  5416521 ccaccatcattaattatattttacttttttttaaagattttatgtgtctttatctgtccaaattgaagaaatggagaaacacataaattgagaggattct 5416620  T
Q  99 aaccc 103  Q
    |||||    
T  5416621 aaccc 5416625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 12312571 - 12312650
Alignment:
Q  13 attatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagag 92  Q
    ||||||||||||||||||||| ||||||||||  |||||||||| ||||| |||||||| |||| |||||||||||||||    
T  12312571 attatattttacttttttcaaaattttatgtgtctttatctctctaaattgaagaaatggagaaacacataaatggagag 12312650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 33262608 - 33262699
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagag 92  Q
    |||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||| |||||||  | ||  ||||||||||||||    
T  33262608 ccaccatcattaattatattttactttttttaaaattttatgtgtctttatctctccaaattgaagaaatagaaaaatacataaatggagag 33262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3326536 - 3326435
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtg-cttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    ||||||| ||||||||| ||||||||||||||| | ||| | || |||||||||||| |||||||||||||| || || |||||||||||||||||| ||    
T  3326536 ccaccattattaattattttttacttttttcaaaactttttttgtcttttatctctcaaaattaaagaaatggaggaggacataaatggagaggatctta 3326437  T
Q  100 ac 101  Q
    ||    
T  3326436 ac 3326435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 24073632 - 24073541
Alignment:
Q  4 ccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||||||||| ||  ||||||||||||||||||||| || ||||||||||||  |||||||  |||| |||||||||||||||||||    
T  24073632 ccatcattaattatatattt-ttttttcaagattttatgtgccttcatctctccaaatggaagaaattgagaaacacataaatggagaggatc 24073541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 43447638 - 43447704
Alignment:
Q  3 accatcattaattatattttacttttttcaaga-ttttatgtgcttttatctctccaaattaaagaa 68  Q
    ||||||||||||||||||||||||||||||| | |||||||||  |||||||||| |||| ||||||    
T  43447638 accatcattaattatattttacttttttcaaaatttttatgtgtctttatctctcgaaataaaagaa 43447704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 30567916 - 30567859
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaatt 62  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||| || |||||    
T  30567916 catcattaattatattttacttttttcaaaattttatgtgtctttatctatcaaaatt 30567859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 26428650 - 26428574
Alignment:
Q  13 attatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatgga 89  Q
    ||||| ||||||||||||||| | ||| ||||  | ||||||||||||||  ||||||| ||||| |||||||||||    
T  26428650 attattttttacttttttcaaaaatttgtgtgtctatatctctccaaattgtagaaatggagaaggacataaatgga 26428574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 25442277 - 25442331
Alignment:
Q  47 tttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    |||||||||||||||  |||||||| |||||  ||||||||||||||||| ||||    
T  25442277 tttatctctccaaatggaagaaatggagaaggccataaatggagaggatcttaac 25442331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31862276 - 31862370
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||||||| |||||||||||  || ||||| ||||  | |||||||||||||   ||||||  ||||| | |||||| ||||||||    
T  31862276 ccaccatcattaattattttttactttttctaaaattttgtgtgtctatatctctccaaatggtagaaatagagaaggatataaattgagaggat 31862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 12312536 - 12312572
Alignment:
Q  5 catcattaattatattttacttttttcaagattttat 41  Q
    ||||||||||||||||||||||| || ||||||||||    
T  12312536 catcattaattatattttactttctttaagattttat 12312572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33841860 - 33841920
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaat 61  Q
    |||||||||||||||||  | |||| ||||||||||||| ||||  ||||||| |||||||    
T  33841860 ccaccatcattaattattgtatactcttttcaagattttttgtgtctttatctttccaaat 33841920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12380966 - 12381068
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  12380966 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 12381065  T
Q  101 ccc 103  Q
    |||    
T  12381066 ccc 12381068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12385033 - 12385135
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  12385033 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 12385132  T
Q  101 ccc 103  Q
    |||    
T  12385133 ccc 12385135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 50484405 - 50484303
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||    
T  50484405 ccaccgtcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaa 50484306  T
Q  101 ccc 103  Q
    |||    
T  50484305 ccc 50484303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40328297 - 40328193
Alignment:
Q  1 ccaccatcattaattatattttactttttt-caagattttatgtg-cttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcct 98  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |    
T  40328297 ccaccatcattagttatattttactttttttcaagattttatgtgtcttttatctctccaaattaaagaaatgaagaaacacataaatgaagaggatctt 40328198  T
Q  99 aaccc 103  Q
    |||||    
T  40328197 aaccc 40328193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7841766 - 7841868
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| | || || |||||||||||| |||||||    
T  7841766 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacatataaatggagagaatcctaa 7841865  T
Q  101 ccc 103  Q
    |||    
T  7841866 ccc 7841868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12151786 - 12151684
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || ||||| |||| ||||||||||| ||||||| |||    
T  12151786 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaataaatggagaaacacataaatggggaggatcttaa 12151687  T
Q  101 ccc 103  Q
    |||    
T  12151686 ccc 12151684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 45978037 - 45977939
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    |||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  45978037 catcgttaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 45977939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 50294121 - 50294211
Alignment:
Q  3 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagagg 93  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||  |||||||  |||| ||| ||||||||||||    
T  50294121 accatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacgtaaatggagagg 50294211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 23862011 - 23862116
Alignment:
Q  1 ccaccatcattaattatattttactttt-ttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||  ||||||| |||||||| |||||||  |||| ||||| |||| ||||||| |||    
T  23862011 ccaccatcattaattatattttattttttttcaagattttatgtgtctttatctttccaaattgaagaaatagagaaacacatgaatgaagaggattcta 23862110  T
Q  100 acccta 105  Q
    ||||||    
T  23862111 acccta 23862116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 48327209 - 48327312
Alignment:
Q  1 ccaccatcattaattatattttactttt-ttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| | ||||| |||||||||  |||||||  | || ||||||||||||||||||| ||    
T  48327209 ccaccatcattaattatattttattttttttcaagattttatgtacctttatatctccaaatggaagaaattgataaacacataaatggagaggatctta 48327308  T
Q  100 accc 103  Q
    ||||    
T  48327309 accc 48327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2845285 - 2845189
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaatt-aaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||  |||||||||||||||| | ||||||  ||||  ||||||||||||||||||    
T  2845285 ccaccatcattaattatattttactattttcaaaattttgtgtgtatttatctctccaaattgatagaaatagagaaaaacataaatggagaggatc 2845189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 18976365 - 18976452
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||| ||||| ||||||||| ||||| |||  || |||||||||||||   ||||||||||||| |||||||||||||||||    
T  18976365 catcattaattat-ttttatttttttcaaaattttgtgt--ttatatctctccaaatggtagaaatgaagaaggacataaatggagaggat 18976452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 35977930 - 35977883
Alignment:
Q  56 ccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  35977930 ccaaattaaagaaatgaataaacacataaatggagaggatcctaaccc 35977883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 10646898 - 10646833
Alignment:
Q  36 ttttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||| |||||||||| ||||||||| ||||||| ||  |||||||||||||| ||| ||||    
T  10646898 ttttatgtgtttttatctcttcaaattaaacaaatgaaaaaagacataaatggagagaatcttaac 10646833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 45970861 - 45970796
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaat 70  Q
    ||||||||||||| ||||||||||||||| ||||| ||||  ||||||||| ||||| ||| ||||    
T  45970861 catcattaattattttttacttttttcaaaattttgtgtgtctttatctcttcaaatgaaaaaaat 45970796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 23916105 - 23916013
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||||||| ||  ||||||||||| ||||| |||| |||||| ||||||||| ||| ||||| ||||  | | |||||||||||||    
T  23916105 ccaccatcattaattattttaaacttttttcaa-atttt-tgtgtttttatatctccaaatgaaataaatggagaaaaatacaaatggagaggat 23916013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 46608433 - 46608523
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||| ||||||||||||||| | ||  ||||  ||||| |||||||||  |||||||   | || ||||||||||||||||||    
T  46608433 ccaccatcattaattattttttacttttttcaaaactt--tgtgtctttatttctccaaatggaagaaat---ggaggacataaatggagaggatc 46608523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5047437 - 5047536
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaaga-agcacataaatggagaggatccta 99  Q
    ||||||||||||||||| || || |||||||||  |||| ||||| |||||||||| ||||  |||||||| ||| || | |||||||||||||||| ||    
T  5047437 ccaccatcattaattattttata-ttttttcaaacttttttgtgcctttatctctctaaatggaagaaatggagatagta-ataaatggagaggatctta 5047534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 40988723 - 40988674
Alignment:
Q  12 aattatattttacttttttcaagattttatgtgcttttatctctccaaat 61  Q
    |||||| ||||||||||||||| ||||| ||||  |||||||||||||||    
T  40988723 aattattttttacttttttcaaaattttgtgtgtctttatctctccaaat 40988674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 19910568 - 19910511
Alignment:
Q  3 accatcattaattatatttta-cttttttcaagattttatgtgcttttatctctccaaat 61  Q
    ||||| |||||||||||||||  ||||||||| ||||||||||  |||||||||||||||    
T  19910568 accattattaattatattttattttttttcaaaattttatgtg--tttatctctccaaat 19910511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21151171 - 21151069
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| ||||||||||||||| |||||||    
T  21151171 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagagaatcctaa 21151072  T
Q  101 ccc 103  Q
    |||    
T  21151071 ccc 21151069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12139345 - 12139245
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  12139345 ccaccatcattaattatattttactttttttaagattttatgtg--tttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 12139248  T
Q  101 ccc 103  Q
    |||    
T  12139247 ccc 12139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 16366537 - 16366438
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||    
T  16366537 ccaccatcattaattatattttacttttttcaagattttacgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagatgatcctaa 16366438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 47226130 - 47226229
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||  |||| |||||||||||||||||||||||    
T  47226130 ccaccatcattaattatattttactttttccaagattttatgtg-ttttatctctccaaattgaagaaatagagaaacacataaatggagaggatcctaa 47226228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 18198275 - 18198180
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||| |||| |||||||||||||||||||    
T  18198275 ccaccatcattaattatattttatttttttcaagattttatgtgattttatctctacaaattgaagaaatggagaaacacataaatggagaggatc 18198180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7362587 - 7362497
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggaga 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| ||||||||||||||    
T  7362587 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 7362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 25084784 - 25084886
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||| ||||||||| ||||| |||| ||||||||||||||||||| |||    
T  25084784 ccaccatcattaattatattttatttttttcaaaattttatgtgtctttatctcttcaaattaaaaaaatggagaaacacataaatggagaggatcataa 25084883  T
Q  101 ccc 103  Q
    |||    
T  25084884 ccc 25084886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 45260487 - 45260586
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagagg-atcctaaccc 103  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||| |||| ||||||||| |||||| ||||||||||    
T  45260487 catcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatagagaggaatcctaaccc 45260586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 44647978 - 44647882
Alignment:
Q  4 ccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||||   |||||| |||||||| |||| ||||||||||||||||||| ||||||    
T  44647978 ccatcattaattatattttacatttttcaagattttatgtgtctttatct---caaattgaagaaatggagaaacacataaatggagaggatcataaccc 44647882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9559110 - 9559201
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagag 92  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||  |||||||  |||| || ||||||||||||    
T  9559110 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaaacatataaatggagag 9559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4888486 - 4888391
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||||||||||||||||  ||||| |||||||||||||  |||||||||||||||  |||||||  |||| |||||||||| ||||||||    
T  4888486 ccaccatcattaattatattttatgttttttaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacataaatgaagaggatc 4888391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29631067 - 29630967
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||| ||||||||||||  |||||||||||||| ||||||||||  ||||| ||||||||| ||||||||| ||||  |||| ||||||||||||| |||    
T  29631067 ccactatcattaattattctttacttttttcaaaattttatgtgtctttatatctccaaatgaaagaaatggagaaagacatgaatggagaggatcttaa 29630968  T
Q  101 c 101  Q
    |    
T  29630967 c 29630967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 33450521 - 33450431
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||| ||||| ||||||||| ||||| |||| || |||||||||||||   ||||||| ||||| ||||||||| |||||||    
T  33450521 catcattaattattttttatttttttcaaaattttgtgtgtttatatctctccaaatggtagaaatggagaaggacataaatgaagaggat 33450431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40019700 - 40019640
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaat 61  Q
    ||||||||||||||||  || |||||||||||||||||| |||| ||||||||||||||||    
T  40019700 ccaccatcattaattactttatacttttttcaagattttttgtgtttttatctctccaaat 40019640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 47500343 - 47500433
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||  | |||||||| ||||   ||||||| ||||| |||||||||||||||||    
T  47500343 catcattaattattttttatttttttcaaaattttgtgtgtctatatctctctaaatggtagaaatggagaaggacataaatggagaggat 47500433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32915975 - 32915883
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||| |||||||||||   ||||| ||  |||| ||||  |||||||||||||||  |||||||| ||||| |||||||||| |||||||    
T  32915975 ccaccatcatgaattatatttt---tttttaaaacttttttgtgtctttatctctccaaatggaagaaatggagaagaacataaatggggaggatc 32915883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 39855873 - 39855908
Alignment:
Q  5 catcattaattatattttacttttttcaagatttta 40  Q
    |||||||||||| |||||||||||||||||||||||    
T  39855873 catcattaattaaattttacttttttcaagatttta 39855908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 30153240 - 30153337
Alignment:
Q  3 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||||||||| || || |||||||||  |||| | ||  |||||||||||||||  ||| |||||||| |  ||||||||||||||||| ||||    
T  30153240 accatcattaattattttatatttttttcaattttttttttgtctttatctctccaaatggaag-aatgaagatgatcataaatggagaggatcttaac 30153337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 34986006 - 34986095
Alignment:
Q  5 catcattaattatattttactttttt-caagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||| ||||| |||||| ||| |||||||||   | |||||||||||||   ||||||| ||||  |||||||||||||||||    
T  34986006 catcattaattattttttattttttttcaaaattttatgtc--tatatctctccaaatggtagaaatggagaaagacataaatggagaggat 34986095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29698182 - 29698080
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||| |||| |||||||||||||||||||||||    
T  29698182 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatttctccaaattgaagaaatggagaaacacataaatggagaggatcctaa 29698083  T
Q  101 ccc 103  Q
    |||    
T  29698082 ccc 29698080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1249202 - 1249304
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||| |||| ||||||||||||||||||| |||    
T  1249202 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaa 1249301  T
Q  101 ccc 103  Q
    |||    
T  1249302 ccc 1249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 4804467 - 4804365
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||| |||| || ||||||||||||||||||||    
T  4804467 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaa 4804368  T
Q  101 ccc 103  Q
    |||    
T  4804367 ccc 4804365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7162103 - 7162001
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| ||| ||||| |||||||||||||    
T  7162103 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacgtaaatagagaggatcctaa 7162004  T
Q  101 ccc 103  Q
    |||    
T  7162003 ccc 7162001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 32737893 - 32737791
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||| |||| || ||||||||||||||||||||    
T  32737893 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaa 32737794  T
Q  101 ccc 103  Q
    |||    
T  32737793 ccc 32737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 21159425 - 21159523
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||| |    |||||||| ||||||||||||||    
T  21159425 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatatctccaaattgaagaaatgga----cacataaacggagaggatcctaa 21159520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17944181 - 17944106
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaa 76  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||    
T  17944181 ccaccatcattaattatattttactttttccaagattttatgtgtttttatctctccaaattgaagaaatggagaa 17944106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12412656 - 12412586
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatg 71  Q
    ||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||| ||||||||    
T  12412656 ccaccatcattaattatattttacttttttcaaaattttatgtatttttatctctccaaattgaagaaatg 12412586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 30460831 - 30460764
Alignment:
Q  9 attaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaa 76  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||    
T  30460831 attaattatattttacttttttcaagattttatgtgtctttatctctccaaatagaagaaatgaagaa 30460764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1518334 - 1518405
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatga 72  Q
    |||||||||||||||||||||||||||||| || ||||||||||  ||||||| | ||||| ||||||||||    
T  1518334 ccaccatcattaattatattttactttttttaaaattttatgtgtatttatcttttcaaatgaaagaaatga 1518405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 27826557 - 27826462
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||| |||||  ||  |||||||||  |||||||||| ||||  |||||||  |||| |||||||||||||||||||    
T  27826557 ccaccatcattaattatattttattttttaaaattttttatgtgtctttatctctcaaaatggaagaaattgagaaacacataaatggagaggatc 27826462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1516245 - 1516314
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaat 70  Q
    |||||||||||||||||||||||||||||| || ||||||||||  ||||||| | ||||| ||||||||    
T  1516245 ccaccatcattaattatattttactttttttaaaattttatgtgtatttatcttttcaaatgaaagaaat 1516314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 13089805 - 13089899
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatg-aagaagcacataaatggagaggatccta 99  Q
    ||||||||||||||||||||||| ||||||||| |||||||||| |||         ||||| |||||||| ||||| |||||||||| |||||||||||    
T  13089805 ccaccatcattaattatattttatttttttcaaaattttatgtgtttt---------aaattgaagaaatgaaagaaacacataaatgaagaggatccta 13089895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 227624 - 227714
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||| ||||| |||||| |||||||| | ||| ||||  | ||||||||||||||  ||||||| ||||||||||||||| |||||||    
T  227624 catcattgattattttttacctttttcaaaactttgtgtgtctatatctctccaaattgtagaaatggagaagcacataaatgaagaggat 227714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 13888617 - 13888663
Alignment:
Q  49 tatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    |||||||||||||   ||||||||||||| |||||||||||||||||    
T  13888617 tatctctccaaatggtagaaatgaagaaggacataaatggagaggat 13888663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2800667 - 2800727
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaat 61  Q
    ||||||||||| ||||| |||||||||||||||  |||| || | || |||||||||||||    
T  2800667 ccaccatcattgattattttttacttttttcaattttttttgagtttatatctctccaaat 2800727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 17398774 - 17398810
Alignment:
Q  25 ttttttcaagattttatgtgcttttatctctccaaat 61  Q
    ||||||||||||||||||||  |||||||||||||||    
T  17398774 ttttttcaagattttatgtgtctttatctctccaaat 17398810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 35316844 - 35316741
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| |||||||| |||| ||| |||||||||||||||||||    
T  35316844 ccaccatcattaattatattttacttttttcaagattttatatgtctttatctctccaaattgaagaaatggagaaacacgtaaatggagaggatcctaa 35316745  T
Q  101 ccct 104  Q
    ||||    
T  35316744 ccct 35316741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39465794 - 39465699
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| |||||||||||||||||||    
T  39465794 ccaccatcattaattatattttacttttttcaagattttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaatggagaggatc 39465699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 41983401 - 41983497
Alignment:
Q  6 atcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  41983401 atcattaattatattttacttttttcaagattt-atgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaaccc 41983497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 28564911 - 28564815
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaa-gattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||||||||||||||||||||||| || |||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  28564911 ccaccatcattaattatattttacttttttaaaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatc 28564815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 13238700 - 13238605
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| |||||||  |||| | |||||||||||||||||    
T  13238700 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaattgagaaacgcataaatggagaggatc 13238605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 374499 - 374585
Alignment:
Q  6 atcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagag 92  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||| |||||||||||||||    
T  374499 atcattaattatattttacttttttcaagattttatgtgtttttatctctctaaatgaaagaaagggagaaacacataaatggagag 374585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 23259543 - 23259646
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||  |||||| ||| ||||| ||||||||||||| |  ||||||| ||| ||| ||||    
T  23259543 ccaccatcattaattatattttactttttttaagattttatatgtctttatccctcaaaattgaagaaatgaagaaacgtataaatgaagatgattctaa 23259642  T
Q  101 ccct 104  Q
    ||||    
T  23259643 ccct 23259646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10877722 - 10877619
Alignment:
Q  1 ccaccatcattaattatattttacttttttca--agattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcct 98  Q
    ||||||||||||||||||||| | ||||||    | |||||||||| ||||||||||||||||| |||||||| |||| |||||||||| ||||||||||    
T  10877722 ccaccatcattaattatatttcatttttttttttaaattttatgtg-ttttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcct 10877624  T
Q  99 aaccc 103  Q
    |||||    
T  10877623 aaccc 10877619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45625118 - 45625216
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||| |||||||  ||||||||||||||| |||  |||||||||| ||||| |||||||| |||| |||||     |||||||||||||    
T  45625118 ccaccatcattaattttattttatatttttcaagattttacgtgtctttatctctctaaattgaagaaatggagaaacacatt----gagaggatcctaa 45625213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 2061382 - 2061296
Alignment:
Q  15 tatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||  |||||||  |||  |  |||||||||||||||| ||||    
T  2061382 tatattttacttttttcaagattttatgcgtctttatctctccaaatggaagaaattgagatactaataaatggagaggatcttaac 2061296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 12949482 - 12949429
Alignment:
Q  7 tcattaattatattttacttttttcaagattttatgtgcttttatctctccaaat 61  Q
    ||||||||||| |||||||||||||||||||||||||   |||||||||||||||    
T  12949482 tcattaattat-ttttacttttttcaagattttatgtatctttatctctccaaat 12949429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21454550 - 21454582
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  21454550 ccaccatcattaattattttttacttttttcaa 21454582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7166 - 7064
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||  ||||||||| |||||| ||||||||||||| |||||||||||||||||||||||    
T  7166 ccaccatcattaattatattttatttttttcaagattttatatgtctttatctctgcaaattgaagaaatgaagaaacacataaatggagaggatcctaa 7067  T
Q  101 ccc 103  Q
    |||    
T  7066 ccc 7064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 6489 - 6550
Alignment:
Q  107 ataatgaggccaaagtatagaaatggagaaggcaaccaaatgcatacccttgtctcactatc 168  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  6489 ataatgaggccaaagtatacaaatggagaaggaaaccaaatgcatacccttgcctcactatc 6550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 208078 - 207980
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  208078 catcattaattatattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 207980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2230002 - 2229900
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||  |||| |||||||||| ||||||||||||    
T  2230002 ccaccatcattaattatattttacttttttcaaaattttatgtgtctttatctctccaaattaaagaaatagagaaacacataaatgaagaggatcctaa 2229903  T
Q  101 ccc 103  Q
    |||    
T  2229902 ccc 2229900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34373850 - 34373750
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||||| |||||  ||||||||||||||||    
T  34373850 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaaaaaatgaagaaacacattgatggagaggatcctaa 34373751  T
Q  101 c 101  Q
    |    
T  34373750 c 34373750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 43720003 - 43720105
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||| ||||||||    
T  43720003 ccaccatcattaattatattttattttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaagatcctaa 43720102  T
Q  101 ccc 103  Q
    |||    
T  43720103 ccc 43720105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 40851791 - 40851690
Alignment:
Q  3 accatcattaatt-atattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||||| | |||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||||  |||||||||||||||||||||||    
T  40851791 accatcattaaatcatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatcctaac 40851692  T
Q  102 cc 103  Q
    ||    
T  40851691 cc 40851690  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34373641 - 34373731
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggaga 91  Q
    ||||||||||||||||||||||||||||||||||||||| |||   |||||||||||||||| |||||||| |||| ||||||||||||||    
T  34373641 ccaccatcattaattatattttacttttttcaagattttttgtctctttatctctccaaattgaagaaatggagaaacacataaatggaga 34373731  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 12402985 - 12402883
Alignment:
Q  1 ccaccatcattaattatattttacttttttc-aagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||  |||||||||| |||||||||||||| |||||||    
T  12402985 ccaccattattaattatattttacttttttttaagattttatgtgtctttatctctccaaattaagaaaatgaagaaacacataaatggaga-gatccta 12402887  T
Q  100 accc 103  Q
    ||||    
T  12402886 accc 12402883  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27033670 - 27033595
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaa 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| ||||    
T  27033670 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaa 27033595  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19830487 - 19830591
Alignment:
Q  1 ccaccatcattaattatattttac-ttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacat-aaatggagaggatcct 98  Q
    |||||||||||||||||||||||| |||||| |||||||||||||  |||||||||||||||| |||||||| | || ||||| |||||||||||||| |    
T  19830487 ccaccatcattaattatattttaccttttttaaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaaatggagaggatctt 19830586  T
Q  99 aaccc 103  Q
    |||||    
T  19830587 aaccc 19830591  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 550872 - 550972
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaa 100  Q
    ||||||| |||| ||||||||||||||||| || |||||||||   |||||||||||||||  |||||||| ||||  |||||||||||||||||| |||    
T  550872 ccaccattattatttatattttacttttttaaaaattttatgtatctttatctctccaaatggaagaaatggagaaagacataaatggagaggatcttaa 550971  T
Q  101 c 101  Q
    |    
T  550972 c 550972  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 46167410 - 46167322
Alignment:
Q  3 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggaga 91  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||  |||||||||| ||||| |||||||| | || ||||||||||||||    
T  46167410 accattattaattatattttacttttttcaagattatatttgtctttatctctctaaattgaagaaatggaaaaacacataaatggaga 46167322  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 48084834 - 48084744
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggat 95  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||  | |||||||||||||   ||||||| ||||| |||||||||||||||||    
T  48084834 catcattaattattttttatttttttcaaaattttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaatggagaggat 48084744  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 52859436 - 52859528
Alignment:
Q  1 ccaccatcattaattatattttact-tttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagag 92  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||  ||||| |||||||||   ||||||| ||||  ||||||||| ||||    
T  52859436 ccacaatcattaattatattttactcttttttaagattttatgtgtatttatttctccaaatggtagaaatggagaaagacataaatgaagag 52859528  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 566838 - 566898
Alignment:
Q  9 attaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaat 70  Q
    |||| ||||||||||||||| ||||||||||||||  ||||||||||||||||  |||||||    
T  566838 attatttatattttactttt-tcaagattttatgtatttttatctctccaaatggaagaaat 566898  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 2310324 - 2310235
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||| ||||||||| || || ||||  ||||  |||||||||| ||||  ||||||| || |||||| |||||||||| ||||    
T  2310324 catcattaattattttttactttctttaaaattt--tgtgtctttatctctctaaatggaagaaataaataagcacgtaaatggagatgatc 2310235  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 32577526 - 32577451
Alignment:
Q  25 ttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaac 101  Q
    ||||||||||||||| ||||  |||||||||||||||  |||||||| |||||    |||||||| |||||||||||    
T  32577526 ttttttcaagatttt-tgtgtctttatctctccaaatagaagaaatggagaagagtttaaatggaaaggatcctaac 32577451  T

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Target: scaffold0035 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 16457 - 16555
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||||    
T  16457 catcattaattatattttatttttttcaagattttatgtaattttatctctccaaattgaagaaatggagaaacacataaattgagaggatcctaaccc 16555  T

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Target: scaffold0006 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 73900 - 73998
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaaccc 103  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||| ||||    
T  73900 catcattaattatattttatttttttcaagattttatgtgtttttatctctctaaattgaagaaatggagaaacacataaatggagagcatcctgaccc 73998  T

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Target: scaffold0456 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 13715 - 13645
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatg 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  13715 ccaccatcattaattatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatg 13645  T

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Target: scaffold0009 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 6493 - 6585
Alignment:
Q  3 accatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatcctaacc 102  Q
    ||||||||||||||||||||||||||| ||||||||||||||  |||||||||| ||||        ||||||| |||||||||||||||||||||||||    
T  6493 accatcattaattatattttactttttccaagattttatgtgtctttatctctcaaaat--------tgaagaaacacataaatggagaggatcctaacc 6584  T

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Target: scaffold0126 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 22506 - 22593
Alignment:
Q  9 attaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||| ||||  |||||||| |||   ||||||||||||| ||||    
T  22506 attaattatattttacttttttcaagattttatgtgtatttatctctctaaatgtaagaaatggagatagacataaatggagaagatc 22593  T

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Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9257 - 9349
Alignment:
Q  1 ccaccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatc 96  Q
    |||||||||||||||||||| |   ||||| ||||||| |||||| |||||||||||||||  |||||||  |||| |||||||||||||||||||    
T  9257 ccaccatcattaattatattat---ttttttaagatttcatgtgcctttatctctccaaatggaagaaattgagaaacacataaatggagaggatc 9349  T

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Target: scaffold0468 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 5625 - 5531
Alignment:
Q  5 catcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatgaagaagcacataaatggagaggatccta 99  Q
    ||||||||||||| || ||||||||||||  || | | ||  |||||||||||||||  |||||||||||| |  ||||||||||||||||||||    
T  5625 catcattaattattttatacttttttcaaacttctttatgtctttatctctccaaatggaagaaatgaagaggatcataaatggagaggatccta 5531  T

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Target: scaffold0252 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 10531 - 10600
Alignment:
Q  2 caccatcattaattatattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatg 71  Q
    ||||||||||||| |  || ||||||||| |||||||| |||  |||||||||| ||||| |||||||||    
T  10531 caccatcattaataactttatactttttttaagattttttgtatttttatctctacaaatgaaagaaatg 10600  T

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