View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15167_low_9 (Length: 465)
Name: NF15167_low_9
Description: NF15167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15167_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 11417881 - 11417509
Alignment:
| Q |
18 |
aaagtctatctgtgtgtgaacttcagatgatctgcaatacctaatcctttagggccatttgttatggtgtcttcaaacaatgtatttgatgcaaaatgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11417881 |
aaagtctatctgtgtgtgaacttcagatgatctgcaatacctaatcctttagggccatttgttatggtgtcttcaaacaatgtatttgatgcaaaatgca |
11417782 |
T |
|
| Q |
118 |
tttggaagcatagtattaagtgaagtgaaatgtcagacgtagtgtagtaatattgtttcattagatgaatttgtccttgccattaaaaaagaatccagtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11417781 |
tttggaagcatagtattaagtgaagtgaaatgtcagacgtagtgtagtaatattgtttcattagatgaatttgtccttgctattaaaaaagaatccagtg |
11417682 |
T |
|
| Q |
218 |
tgtatacatgtctatttaaggggttaccatcaaacagaaagaaggcttgatagaacgatttgcaaccaacttcggatcaactcatgcatctcaacaatct |
317 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11417681 |
tgtatacatgtctatctaaggggttagcatcaaacagaaagaagacttgatagaacgatttgcaaccaacttcggatcaactcatgcatctcaacaatcc |
11417582 |
T |
|
| Q |
318 |
gctctactcttacaagagttcattatccacttcttttagatttttagattagtgaggttagggttacatctaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11417581 |
gctctactcttacaagagttcattatccacttcttttagattttcagattagtgaggttagggttacatctaa |
11417509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University