View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15168_high_1 (Length: 323)
Name: NF15168_high_1
Description: NF15168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15168_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 52423073 - 52423385
Alignment:
| Q |
1 |
ctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctttgaatagaagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52423073 |
ctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatactgggtaggtctgagtagagcaacttcttccaattctgtgaatagaagat |
52423172 |
T |
|
| Q |
101 |
gacaacataatcattgatcagttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgagaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
52423173 |
gacaacataatcattgatcatttaaattattataaaattgatagagattagcatctattccagttccttagattacaagtttccaagtcagtgaaaaaaa |
52423272 |
T |
|
| Q |
201 |
cctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52423273 |
cctaaatctccaataaagtgcagcgctgttggttctttgcaggctggtgtgtttgatttctactttattgggagattgtttctatctcttatttcgaagg |
52423372 |
T |
|
| Q |
301 |
ggattcgtctctg |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52423373 |
ggattcgtctctg |
52423385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42715975 - 42716185
Alignment:
| Q |
1 |
ctaataaccaatctattcaaatgcaagtttgtttcaagttttctatcatact-gggtaggtctgagtagagcaacttcttcca-attctttgaatagaag |
98 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| || || |||| ||||||| |
|
|
| T |
42715975 |
ctaataaccaatctattcaaaagcaagtttgtttcaagttctctatcatactggggtaggtctgagtagagaaacttcttacagtttttttgtatagaag |
42716074 |
T |
|
| Q |
99 |
atgacaacataatcattgatcagttaaattattataaaattgatagagattagcatctat-tccagttccttagattacaagtttccaagtcagtgagaa |
197 |
Q |
| |
|
|||| | |||||||||||||| ||| | |||||| ||||||| || ||||||||||||| |||| |||||||||||||||||||||||||| || ||| |
|
|
| T |
42716075 |
atgaaagcataatcattgatctgttcatttattaaaaaattgctactgattagcatctatctccaattccttagattacaagtttccaagtc--tgtgaa |
42716172 |
T |
|
| Q |
198 |
aaacctaaatctc |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42716173 |
aaacctaaatctc |
42716185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University