View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_high_11 (Length: 264)
Name: NF15169_high_11
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 50789848 - 50790098
Alignment:
| Q |
1 |
actaattaagctgaaaattaaaaaggaaataacatacaaa-----agaggttaccttaagggtactccatgagagtgacaatatcttaacgtagttagct |
95 |
Q |
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| T |
50789848 |
actaattaagctgaaaattaaaaaggaaataacatacaaattaaaagaggttaccttaagggtactccatgagagtgacaatatcttaacgtagttagct |
50789947 |
T |
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| Q |
96 |
agcatatgcagccaactgattaagcctgaatatgaaaatctgcatctacatcaaaatttacctgttcaagaaaataaagatcacatacagagacctggtg |
195 |
Q |
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| T |
50789948 |
agcatatgcagccaactgattaagcctgaatatgaaaatctgcatctacatcaaaatttacctgttcaagaaaataaagatcacatacagagacctggtg |
50790047 |
T |
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| Q |
196 |
aatgagatcacgcaagagagtgatagaattaaggttcggagtagaaatatt |
246 |
Q |
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| T |
50790048 |
aatgagatcacgcaagagagtgatagaattaaggttcggagtagaaatatt |
50790098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 16911016 - 16910925
Alignment:
| Q |
151 |
atttacctgttcaagaaaataaagatcacatacagagacctggtgaatgagatcacgcaagagagtgatagaattaaggttcggagtagaaa |
242 |
Q |
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|||||| | |||||||| | |||| || ||| |||||| || |||| |||| |||| ||||||| ||||||||||||||| |||||||||| |
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| T |
16911016 |
atttacttcttcaagaacagaaaggtcgcatgcagagaattgatgaacgagaccacgaaagagagagatagaattaaggtttggagtagaaa |
16910925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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