View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_high_14 (Length: 251)
Name: NF15169_high_14
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_high_14 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 24855638 - 24855877
Alignment:
| Q |
11 |
aaatactgcctttatggtgagtcttacactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaa |
110 |
Q |
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| T |
24855638 |
aaatactgcctttatggtgagtcttacactataagaattctctttattagggatcaatt-aaaatttcattactaaattatttagaccctcggtaattaa |
24855736 |
T |
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| Q |
111 |
tgacggtctaaaccctcagaaatgcaacaaaaaccatcaataacattggtgacggaataaatcctcaataattcagttaattaagttacagatggataaa |
210 |
Q |
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| T |
24855737 |
tgacggtctaaaccctcagaaatgcaacaaaaaccctcaataacattgctgacgaaataaatcctcaataattcagataattaagttaatgatggataaa |
24855836 |
T |
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| Q |
211 |
tccgccaatactgcaattgacaaatctgccttagattagtt |
251 |
Q |
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| T |
24855837 |
tccgccagtactgcaattgacaaatctgccttagattagtt |
24855877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 27410187 - 27410030
Alignment:
| Q |
37 |
cactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgca |
136 |
Q |
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| T |
27410187 |
cactacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgta |
27410088 |
T |
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| Q |
137 |
aca-aaaaccatcaataacattggtgacggaataaatcctcaataattcagttaatta |
193 |
Q |
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| T |
27410087 |
atagaaaaccctcaataacattactgacggaataaaccctcaataattcagttgatta |
27410030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 250
Target Start/End: Original strand, 31978535 - 31978749
Alignment:
| Q |
37 |
cactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgca |
136 |
Q |
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| T |
31978535 |
cactacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgta |
31978634 |
T |
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| Q |
137 |
aca-aaaaccatcaataacattggtgacggaataaatcctcaataattcagttaattaagttacagatggataaatccgccaatactgcaattgacaaat |
235 |
Q |
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| T |
31978635 |
atagaaaaccctcaataacattactgacggaataaaccctcaataattcagttgattacattactgacggataaatccgtcggtactacaatcgacaaat |
31978734 |
T |
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| Q |
236 |
ctgccttagattagt |
250 |
Q |
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|| |||||||||||| |
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| T |
31978735 |
ctaccttagattagt |
31978749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 250
Target Start/End: Complemental strand, 29915795 - 29915580
Alignment:
| Q |
36 |
acactataagaattctctttattagggatcaatttaaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgc |
135 |
Q |
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|||||| |||||||| ||||||||| || ||| |||||||| |||||||| || ||||||||| ||||||| || | |||||||||||||| |||| |
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| T |
29915795 |
acactacaagaattccctttattagtgaccaacttaaaattgaattactgagggatctagaccctcagtaattactggcagtctaaaccctcagtaatgt |
29915696 |
T |
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| Q |
136 |
aaca-aaaaccatcaataacattggtgacggaataaatcctcaataattcagttaattaagttacagatggataaatccgccaatactgcaattgacaaa |
234 |
Q |
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|| | |||||| ||||||||||| |||||||||||| ||||||||||| |||| |||| |||| || |||||||||| || |||| |||| |||||| |
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| T |
29915695 |
aatagaaaaccctcaataacattactgacggaataaaccctcaataatttagttgattacattactgacggataaatccatcagtactacaatcgacaaa |
29915596 |
T |
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| Q |
235 |
tctgccttagattagt |
250 |
Q |
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||| |||||||||||| |
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| T |
29915595 |
tctaccttagattagt |
29915580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 22014061 - 22014124
Alignment:
| Q |
123 |
ccctcagaaatgcaacaaaaaccatcaataacattggtgacggaataaatcctcaataattcag |
186 |
Q |
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| T |
22014061 |
ccctcagtaatgcacaaaaaaccctcaataacattagtgacggaataaaccctcaatatttcag |
22014124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 6731822 - 6731766
Alignment:
| Q |
71 |
aaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctc |
127 |
Q |
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| T |
6731822 |
aaaattacattactgacggatttagaccctcagtaattactgacggtctaaaccctc |
6731766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 185
Target Start/End: Original strand, 32089871 - 32089986
Alignment:
| Q |
71 |
aaaattccattactgaattatttagaccctcggtaattaatgacggtctaaaccctcagaaatgcaacaaaaa-ccatcaataacattggtgacggaata |
169 |
Q |
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|||||| ||||||||| ||||||| |||| || |||| |||||| || |||||||| ||| || ||||| || ||||||||||| |||||||||| |
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| T |
32089871 |
aaaattgcattactgagggatttagatcctcagtgattactgacggagtacaccctcagtaattaaaaaaaaaaccctcaataacattattgacggaata |
32089970 |
T |
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| Q |
170 |
aatcctcaataattca |
185 |
Q |
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||||||||||| |||| |
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| T |
32089971 |
aatcctcaatatttca |
32089986 |
T |
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