View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_high_17 (Length: 227)
Name: NF15169_high_17
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 39355028 - 39355248
Alignment:
| Q |
1 |
ttatgctaaggattgctttgacttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39355028 |
ttatgctaaggattgctttgacttcttcaatggccc--atggaattttgtattacataagttggaatatccgatctttggaatcattcttcaaaattagc |
39355125 |
T |
|
| Q |
101 |
tttggtttcttcaagtcctcagatgccagcatgaagtcatgaatgttgtcggccacctagaatcaaaatctccattctatc-tttactaatgtttttgaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
39355126 |
tttggtttcttcaagtcctcagatgccagcatgaagtcatgaatgttgtcggccaccaagaatcaaaatctccgttctatcttttactaatgtttttgaa |
39355225 |
T |
|
| Q |
200 |
aacaaattacctacactcaaaat |
222 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
39355226 |
aacaaattacctacacttaaaat |
39355248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 46911315 - 46911134
Alignment:
| Q |
21 |
acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc |
120 |
Q |
| |
|
|||||||||| | |||| ||| ||||||| || |||||||||||| |||| | ||||||||||| |||||||||| ||||||| |||||| ||||| | |
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| T |
46911315 |
acttcttcaacgaccctaatgaaattttggatgacataagttggattatctgatctttggaatccttcttcaaaaatagcttt-gtttctccaagtacat |
46911217 |
T |
|
| Q |
121 |
agatgccagcatgaagtcatgaatgttgtcggccacctagaatcaaaatctccattctatc-tttactaatgtttttgaaaac |
202 |
Q |
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|||| |||||||| ||||||||| |||||| |||||||| | ||| || ||||| || ||| ||| |||| |||||||||||| |
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| T |
46911216 |
agatcccagcatgtagtcatgaaagttgtctgccacctaaactcagaaactccaatcgatcttttgctaaggtttttgaaaac |
46911134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 32992980 - 32992799
Alignment:
| Q |
21 |
acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc |
120 |
Q |
| |
|
||||||||||||||| | ||| ||||||| || ||||||||||| |||| |||||||| |||| |||||||||| ||||||| |||||| ||||||| | |
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| T |
32992980 |
acttcttcaatggccataatgaaattttggatgacataagttgggttatctggtctttgaaatccttcttcaaaaatagcttt-gtttctccaagtccac |
32992882 |
T |
|
| Q |
121 |
agatgccagcatgaagtcatgaatgttgtcggccacctagaatcaaaatctccattctatc-tttactaatgtttttgaaaac |
202 |
Q |
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| |||||| |||| ||||||||| |||| | ||||| || | | | || |||||||| ||| ||| |||| |||||||||||| |
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| T |
32992881 |
atatgccaacatgtagtcatgaaagttggctgccacttaaacttagaaactccattcgatcttttgctaaggtttttgaaaac |
32992799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 40536814 - 40536996
Alignment:
| Q |
21 |
acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc |
120 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || ||||||||||| |||| |||||||| |||| | |||||||| ||| |||||| ||||||| | |
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| T |
40536814 |
acttcttcaatggccctaatgaaattttggatgacataagttgggttatctggtctttgaaatcctacttcaaaaaacagttttgtttctccaagtccac |
40536913 |
T |
|
| Q |
121 |
agatgccagcatgaagtcatgaatgttgtcggccacctagaatcaaaatctccattctatc-tttactaatgtttttgaaaac |
202 |
Q |
| |
|
||||||||||||| ||||||||| ||| || ||||||| | ||| || ||||| || ||| ||| |||| |||||||||||| |
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| T |
40536914 |
agatgccagcatgtagtcatgaaagttttcttccacctaaactcagaaactccaatcgatcttttgctaaggtttttgaaaac |
40536996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 45753119 - 45753256
Alignment:
| Q |
21 |
acttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctc |
120 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || ||||||||||| ||| ||| |||| |||| |||||||||| ||| ||| |||||| ||||||| |
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| T |
45753119 |
acttcttcaatggccctaatgaaattttggatgacataagttgggttatttggtatttgaaatccttcttcaaaaatag-ttttgtttctccaagtccaa |
45753217 |
T |
|
| Q |
121 |
agatgccagcatgaagtcatgaatgttgtcggccaccta |
159 |
Q |
| |
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||||| ||||||| | ||||||| ||||| |||||||| |
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| T |
45753218 |
agatgtcagcatgtaatcatgaaaattgtctgccaccta |
45753256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 42161543 - 42161642
Alignment:
| Q |
61 |
ttggaatatccggtctttggaatcattcttcaaaattagctttggtttcttcaagtcctcagatgccagcatgaagtcatgaatgttgtcggccacctag |
160 |
Q |
| |
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||||| |||||||||||||||||| |||||||||| ||||||| |||||| || ||| || |||||| || | ||||||||| |||||| ||||||||| |
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| T |
42161543 |
ttggattatccggtctttggaatccttcttcaaaaatagcttt-gtttctccatgtcgacaaatgccaacaggtagtcatgaacgttgtctgccacctag |
42161641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 27890162 - 27890234
Alignment:
| Q |
23 |
ttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaa |
95 |
Q |
| |
|
|||||||||| ||||||| |||||| || ||||| |||||| || |||||||||||||| |||||||||| |
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|
| T |
27890162 |
ttcttcaatgaacctgatgtaattttagataacataggttggattagtcggtctttggaatctttcttcaaaa |
27890234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 26208272 - 26208200
Alignment:
| Q |
23 |
ttcttcaatggccctgatggaattttgtattacataagttggaatatccggtctttggaatcattcttcaaaa |
95 |
Q |
| |
|
|||||||||| ||||||| ||||||| || ||||||| |||| || |||||||||||| || |||||||||| |
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| T |
26208272 |
ttcttcaatgaacctgatgtaattttggataacataaggtggattagccggtctttggattccttcttcaaaa |
26208200 |
T |
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