View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_low_1 (Length: 620)
Name: NF15169_low_1
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 134 - 605
Target Start/End: Complemental strand, 41661483 - 41661011
Alignment:
| Q |
134 |
cgactcatactaggacaaaacacatggct-tattttctagactaatattttaacttgtgggatgtttgcttgcatatgattgaacatgttttaatctttg |
232 |
Q |
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| T |
41661483 |
cgactcatactagggcaaaacacatggctatattttgtagactaatattttaacttgtgggatgtttgcttgcatatgattgaacatgttttaatctttg |
41661384 |
T |
|
| Q |
233 |
actgcttgatttcttagcttgttgtttctagaaactcatttttgtgtacttcatgcttactaatttgtagattgacaattgtgnnnnnnnnnnnnnnnnn |
332 |
Q |
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| T |
41661383 |
actgcttgatttcttagcttgttgtctctggaaactcatttttgtgtacttcatgcttactaatttgtacattgacaattgtgtttttttttttcttttt |
41661284 |
T |
|
| Q |
333 |
gaagttttaccattcttgttttaccccatatctcatccgggtacgtatacaatatatctttttatggacgtatgaataatttactcatgtttttggactt |
432 |
Q |
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|||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || | |
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| T |
41661283 |
gaagttttaccattcttgttttaccctatatctcaccaggatacgtgtacaatatatctttttatggacgtatgaataatttactcctgtttttgcacct |
41661184 |
T |
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| Q |
433 |
gtgattgggtaagccgcaaccttcatcctttttagtttttataattgataaattagtagttaggtttgtaattaaagttactatttttaatcatgtcact |
532 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41661183 |
gtgattgggtaagccgcagccttcatcctttttggtttttataattgataaattagtagttaggtttgtaattaaagttactatttttaatcatgtcact |
41661084 |
T |
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| Q |
533 |
ttttcaattcaactaatgagaatggaattggttgaagtgtatattcacatttgaaatggaagatgaacatttt |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41661083 |
ttttcaattcaactaatgagaatggaattggttgaagtgtatcttcacatttgaaatggaagatgaacatttt |
41661011 |
T |
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