View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15169_low_12 (Length: 263)

Name: NF15169_low_12
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15169_low_12
NF15169_low_12
[»] chr2 (8 HSPs)
chr2 (1-249)||(32904686-32904933)
chr2 (131-221)||(35319304-35319394)
chr2 (147-214)||(17239685-17239752)
chr2 (147-214)||(25985136-25985203)
chr2 (147-221)||(6607915-6607989)
chr2 (147-213)||(11146969-11147035)
chr2 (161-203)||(11671231-11671273)
chr2 (168-214)||(4413700-4413746)
[»] chr5 (5 HSPs)
chr5 (131-203)||(471474-471546)
chr5 (164-208)||(27990163-27990207)
chr5 (146-245)||(36188981-36189080)
chr5 (165-204)||(36593851-36593890)
chr5 (147-188)||(33766191-33766232)
[»] chr4 (16 HSPs)
chr4 (146-204)||(1846213-1846271)
chr4 (136-195)||(33859929-33859988)
chr4 (164-226)||(15633189-15633250)
chr4 (161-231)||(19351318-19351388)
chr4 (146-204)||(25313373-25313431)
chr4 (164-208)||(30265523-30265567)
chr4 (164-208)||(30279728-30279772)
chr4 (164-208)||(30286620-30286664)
chr4 (147-195)||(39267587-39267635)
chr4 (161-213)||(46444249-46444301)
chr4 (164-227)||(12619484-12619547)
chr4 (166-208)||(46826692-46826734)
chr4 (131-208)||(48801957-48802034)
chr4 (162-226)||(28703713-28703777)
chr4 (162-196)||(32296176-32296210)
chr4 (161-229)||(33653086-33653154)
[»] chr8 (7 HSPs)
chr8 (135-208)||(13526035-13526108)
chr8 (135-208)||(13615570-13615643)
chr8 (147-208)||(8768884-8768945)
chr8 (165-208)||(28140732-28140774)
chr8 (136-208)||(41068282-41068353)
chr8 (165-226)||(6413691-6413753)
chr8 (162-208)||(8183583-8183629)
[»] chr1 (10 HSPs)
chr1 (137-214)||(27081672-27081749)
chr1 (161-203)||(30717299-30717341)
chr1 (161-214)||(8981781-8981834)
chr1 (176-223)||(1609541-1609588)
chr1 (165-214)||(36140798-36140847)
chr1 (135-183)||(1608238-1608286)
chr1 (164-208)||(18462674-18462718)
chr1 (147-214)||(41098577-41098644)
chr1 (167-220)||(51117036-51117089)
chr1 (162-206)||(35492048-35492092)
[»] chr6 (4 HSPs)
chr6 (134-203)||(35033549-35033618)
chr6 (147-214)||(34805942-34806009)
chr6 (131-206)||(32505689-32505765)
chr6 (178-227)||(22398344-22398393)
[»] chr3 (6 HSPs)
chr3 (147-199)||(28211974-28212026)
chr3 (147-245)||(49350817-49350915)
chr3 (134-191)||(13702539-13702596)
chr3 (166-204)||(24088184-24088222)
chr3 (162-214)||(55344099-55344152)
chr3 (133-197)||(48334779-48334843)
[»] scaffold0193 (1 HSPs)
scaffold0193 (166-214)||(20030-20078)
[»] chr7 (6 HSPs)
chr7 (165-208)||(29693055-29693098)
chr7 (164-203)||(44565177-44565216)
chr7 (164-226)||(45843590-45843652)
chr7 (147-214)||(25005501-25005568)
chr7 (161-196)||(48982881-48982916)
chr7 (146-195)||(26819600-26819649)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32904686 - 32904933
Alignment:
Q  1 tgataatcacatagtaaaaagcatagaactttttactaataaagcaaaggaagcta-catgaatttatcttgaaaaatgttaacttgtgccgtttagata 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||| || ||| |    
T  32904686 tgataatcacatagtaaaa-gcatagaactttttactaataaagcaaaggaagctaacatcaatttatcttgaaaaatgctgacttgtgcccttcagaca 32904784  T
Q  100 tatgttaagaaacctagaatgannnnnnncttttaggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactat 199  Q
     ||||||||||| |||||||||        ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  32904785 catgttaagaaatctagaatgattttttt-ttttaggaaattgtactaatttatttctctggagattgaaaattaatgttttgtaataaatatttactat 32904883  T
Q  200 ttatggaatttttaagatatgctctaagagtatatgttagcgtgacacat 249  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  32904884 ttatgaaatttttaagatatgctctaagagtacatgttagcgtgacacat 32904933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 35319304 - 35319394
Alignment:
Q  131 tttaggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgc 221  Q
    |||||||||||||   ||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||  |||| ||||||    
T  35319304 tttaggaaattgtgtcaatttattcttctagagattaaaaattaatgttttgtaataaatatttactatttatagaatccttaacatatgc 35319394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 17239752 - 17239685
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||| | | |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  17239752 aatttattcttttagagattgaaaattaatattttgtaataaatatttaccatttatggaatgtttaa 17239685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 25985203 - 25985136
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||| ||| |||| |||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  25985203 aatttattcttctagagactgaaaattaaggttttgtaataaatatttaccatttatggaattcttaa 25985136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 6607915 - 6607989
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgc 221  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||||| || |||||||||||  |||| ||||||    
T  6607915 aatttattcttctagagattgaaaattagtgttttgtaataaatattcaccatttatggaatccttaacatatgc 6607989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 11146969 - 11147035
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaattttta 213  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||  ||||||||||| ||||    
T  11146969 aatttattcttctagagattgaaagttaatgttttgtaataaatatttatcatttatggaatcttta 11147035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 11671273 - 11671231
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttactatttat 203  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  11671273 gagattgaaaattaatgctttgtaataaatatttactatttat 11671231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 4413746 - 4413700
Alignment:
Q  168 aaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  4413746 aaaattaatgttttttaataaacatttactatttatgaaacttttaa 4413700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 471474 - 471546
Alignment:
Q  131 tttaggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttat 203  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  471474 tttaagaaattgtactaatttattcgtctagagattgaaaattaatgttttataataaatatttaccatttat 471546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 27990163 - 27990207
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  27990163 attgaaaattaatgttttgtaataaatatctactatttatggaat 27990207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 245
Target Start/End: Complemental strand, 36189080 - 36188981
Alignment:
Q  146 taatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaagagtatatgttagcgtgac 245  Q
    |||||||||| | | ||||||||||||||||||||| |||||||||||||| |||| | ||||| ||||  ||||  ||||| ||||| |||||| ||||    
T  36189080 taatttattcttttagagattgaaaattaatgttttataataaatatttaccattttttgaattcttaatctatgtcctaagggtataagttagcatgac 36188981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 36593890 - 36593851
Alignment:
Q  165 ttgaaaattaatgttttgtaataaatatttactatttatg 204  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36593890 ttgaaaattaatgttttgtaataaatatttactatttatg 36593851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 33766232 - 33766191
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataa 188  Q
    ||||||||||| |  |||||||||||||||||||||||||||    
T  33766232 aatttattcctttaaagattgaaaattaatgttttgtaataa 33766191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 1846213 - 1846271
Alignment:
Q  146 taatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatg 204  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  1846213 taatttattcttctagagattgaaaattaatgttttgtaataaatatttaccatttatg 1846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 33859929 - 33859988
Alignment:
Q  136 gaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatattta 195  Q
    |||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||||    
T  33859929 gaaattgtaccaatttattcttttagagattgaaaattaatgttttgtaataaatattta 33859988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 15633250 - 15633189
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaa 226  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||| ||||    
T  15633250 attgaaaatta-tgttttgtaataaatatttaccatttatggaattcttaacatatgccctaa 15633189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 19351318 - 19351388
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaagagta 231  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| ||  |||| || ||| |||||||||    
T  19351318 gagattgaaaattaatattttgtaataaatatttaccatttatggtatcattaacatgtgccctaagagta 19351388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 25313431 - 25313373
Alignment:
Q  146 taatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatg 204  Q
    |||||||||| | | |||||||||||||||| ||||||||||||||||||| |||||||    
T  25313431 taatttattcttatagagattgaaaattaatattttgtaataaatatttaccatttatg 25313373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 30265523 - 30265567
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  30265523 attgaaaattaatgttttgtgataaatatttactatttatagaat 30265567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 30279772 - 30279728
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  30279772 attgaaaattaatgttttgtgataaatatttactatttatagaat 30279728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 30286664 - 30286620
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  30286664 attgaaaattaatgttttgtgataaatatttactatttatagaat 30286620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 39267635 - 39267587
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatattta 195  Q
    ||||||||  ||| |||||||||||||||||||||||||||||||||||    
T  39267635 aatttatttttctagagattgaaaattaatgttttgtaataaatattta 39267587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 46444249 - 46444301
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttactatttatggaattttta 213  Q
    |||||||||||||||||||||||||||||||||||  ||||||| ||| ||||    
T  46444249 gagattgaaaattaatgttttgtaataaatatttatcatttatgaaatattta 46444301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 12619484 - 12619547
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaag 227  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||  |||| ||||||| ||||    
T  12619484 attgaaaattaatgttttgtaataaatatttaccaattatgaaatccttaatatatgctttaag 12619547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 46826692 - 46826734
Alignment:
Q  166 tgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  46826692 tgaaaattaatgttttttaataaatatttaccatttatggaat 46826734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 48802034 - 48801957
Alignment:
Q  131 tttaggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||||||    |||||||| |||  ||||||||||||||| |||| |||||||||||||  |||||||||||    
T  48802034 tttaggaaattgtttctatttattcttctaaagattgaaaattaatattttttaataaatatttatcatttatggaat 48801957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 28703713 - 28703777
Alignment:
Q  162 agattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaa 226  Q
    ||||||| ||||||||||||||||||||||||||| || |||| |||  |||| |||||| ||||    
T  28703713 agattgagaattaatgttttgtaataaatatttaccatatatgaaatccttaacatatgccctaa 28703777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 32296210 - 32296176
Alignment:
Q  162 agattgaaaattaatgttttgtaataaatatttac 196  Q
    ||||| |||||||||||||||||||||||||||||    
T  32296210 agattaaaaattaatgttttgtaataaatatttac 32296176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 33653154 - 33653086
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaagag 229  Q
    ||||||||||||||||||||| ||||||| |||||  ||||||| |||  |||| || ||| |||||||    
T  33653154 gagattgaaaattaatgttttataataaaaatttatcatttatgaaatccttaatatgtgccctaagag 33653086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 13526035 - 13526108
Alignment:
Q  135 ggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    ||||||||| ||||||||||| |   |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  13526035 ggaaattgtgctaatttattctttaagagattgaaatttaatgttttgtaatagatatttactatttatggaat 13526108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 13615570 - 13615643
Alignment:
Q  135 ggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    ||||||||| ||||||||||| |   |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  13615570 ggaaattgtgctaatttattctttaagagattgaaatttaatgttttgtaatagatatttactatttatggaat 13615643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 8768884 - 8768945
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||  || |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  8768884 aatttattctcctagagattgaaaattaatgttttgtaataaatatttaccatttattgaat 8768945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 28140732 - 28140774
Alignment:
Q  165 ttgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  28140732 ttgaaaattaatgttttgtaataaata-ttactatttatggaat 28140774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 41068282 - 41068353
Alignment:
Q  136 gaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||| ||||||| ||| ||| || ||| |||||||||||||||| |||||||||||  |||||||||||    
T  41068282 gaaattgtgctaattt-ttcttctagaaattaaaaattaatgttttgtgataaatatttatcatttatggaat 41068353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 6413753 - 6413691
Alignment:
Q  165 ttgaaaattaatgttttgt-aataaatatttactatttatggaatttttaagatatgctctaa 226  Q
    |||||||||||| |||| | ||||||||  | |||||||||||||||||||||||||| ||||    
T  6413753 ttgaaaattaattttttctcaataaataacttctatttatggaatttttaagatatgccctaa 6413691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 8183629 - 8183583
Alignment:
Q  162 agattgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    ||||||||||||||||||||||| |||||  |||||| |||||||||    
T  8183629 agattgaaaattaatgttttgtagtaaatgattactagttatggaat 8183583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 27081672 - 27081749
Alignment:
Q  137 aaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||  ||||||||  |||  |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  27081672 aaattgtatcaatttatttttctaaagattgaaaattaatgttttgtaataaatatttactatttatagaatctttaa 27081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 30717341 - 30717299
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttactatttat 203  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  30717341 gagattgaaaattaatgttttgtaataaatatttactgtttat 30717299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 8981781 - 8981834
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||| |||||    
T  8981781 gagattgaaaattaatgttttgtaatgaatatttaccatttatgaaatctttaa 8981834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 1609541 - 1609588
Alignment:
Q  176 tgttttgtaataaatatttactatttatggaatttttaagatatgctc 223  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||||    
T  1609541 tgttttgtaataaatatttactatttatggaatccttaacatatgctc 1609588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 36140847 - 36140798
Alignment:
Q  165 ttgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| |||||    
T  36140847 ttgaaaattaatattttgtgataaatatttaccatttatggaatctttaa 36140798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 1608238 - 1608286
Alignment:
Q  135 ggaaattgtactaatttattcctctcgagattgaaaattaatgttttgt 183  Q
    ||||||||||| ||||||||| ||  |||||||||||||||||||||||    
T  1608238 ggaaattgtaccaatttattcttcaagagattgaaaattaatgttttgt 1608286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 18462674 - 18462718
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||| |||||||||||  |||||||||||||||||||||||||    
T  18462674 attgaacattaatgtttttaaataaatatttactatttatggaat 18462718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 41098644 - 41098577
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||| | | |||||| ||| |||||||||| |||||||||||||| ||||||  |||||||||    
T  41098644 aatttattcttttagagattaaaagttaatgttttataataaatatttaccatttataaaatttttaa 41098577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 51117036 - 51117089
Alignment:
Q  167 gaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatg 220  Q
    ||||||||||||||| || |||||||||| |||||||||| || |||| |||||    
T  51117036 gaaaattaatgttttttattaaatatttattatttatggatttcttaacatatg 51117089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 35492048 - 35492092
Alignment:
Q  162 agattgaaaattaatgttttgtaataaatatttactatttatgga 206  Q
    ||||| ||||| | ||||||||||||||||||||| |||||||||    
T  35492048 agattaaaaatcattgttttgtaataaatatttaccatttatgga 35492092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 35033549 - 35033618
Alignment:
Q  134 aggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttat 203  Q
    |||||||||| | ||||||||| ||| |||||| |||||||||||||||||||| ||||||||| |||||    
T  35033549 aggaaattgtgccaatttattcttctagagattaaaaattaatgttttgtaatacatatttactgtttat 35033618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 34805942 - 34806009
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||||||||  |||||| |||| |||||    
T  34805942 aatttattcttctagagaatgaaaattaatgttttgtagtaaatatttatcatttatagaatctttaa 34806009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 32505689 - 32505765
Alignment:
Q  131 tttaggaaattgtactaatttattcctctcgagattgaaaattaatgtttt-gtaataaatatttactatttatgga 206  Q
    |||| |||||||| | ||||||||  ||| |||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  32505689 tttaagaaattgtgccaatttatttttctagagattaaaaattaatatttttgtaataaatatttaccatttatgga 32505765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 227
Target Start/End: Complemental strand, 22398393 - 22398344
Alignment:
Q  178 ttttgtaataaatatttactatttatggaatttttaagatatgctctaag 227  Q
    ||||||||||||||||||  ||||||||||| ||||| || |||||||||    
T  22398393 ttttgtaataaatatttatcatttatggaatctttaacatgtgctctaag 22398344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 28212026 - 28211974
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactat 199  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  28212026 aatttattcatctagagattgaaacttaatgttttgtaataaatatttactat 28211974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 49350817 - 49350915
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaagagtatatgttagcgtgac 245  Q
    ||||||||| | | || ||||||| |||| |||||||||||||||||||| |||||||||||  |||| |||| | ||||| ||| | |||||| ||||    
T  49350817 aatttattcttttagaaattgaaagttaaagttttgtaataaatatttaccatttatggaatccttaacatataccctaagggtacaagttagcatgac 49350915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 13702539 - 13702596
Alignment:
Q  134 aggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaata 191  Q
    |||||||||| | ||||||||  ||| ||||||||||||||||||||| |||||||||    
T  13702539 aggaaattgtgccaatttatttttctagagattgaaaattaatgttttataataaata 13702596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 24088184 - 24088222
Alignment:
Q  166 tgaaaattaatgttttgtaataaatatttactatttatg 204  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  24088184 tgaaaattaatgttttataataaatatctactatttatg 24088222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 55344099 - 55344152
Alignment:
Q  162 agattgaaaattaa-tgttttgtaataaatatttactatttatggaatttttaa 214  Q
    |||||||||||||| | |||| ||||||||||||||||||| |||||| |||||    
T  55344099 agattgaaaattaagttttttttaataaatatttactatttgtggaatctttaa 55344152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 48334843 - 48334779
Alignment:
Q  133 taggaaattgtactaatttattcctctcgagattgaaaattaatgttttgtaataaatatttact 197  Q
    ||||||||||| | ||||||||| ||| ||| |||||| | |||||||||| | |||||||||||    
T  48334843 taggaaattgtgccaatttattcttctagaggttgaaagtaaatgttttgtgacaaatatttact 48334779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 20078 - 20030
Alignment:
Q  166 tgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  20078 tgaaaattaatgttttgtaataaatatttaccatttatataatttttaa 20030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 29693055 - 29693098
Alignment:
Q  165 ttgaaaattaatgttttgtaataaatatttactatttatggaat 208  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  29693055 ttgaaaattaatattttgtaataaatatttactattcatggaat 29693098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 44565216 - 44565177
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttat 203  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  44565216 attgaaaattaatgttttgtaataaatatttaccatttat 44565177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 45843652 - 45843590
Alignment:
Q  164 attgaaaattaatgttttgtaataaatatttactatttatggaatttttaagatatgctctaa 226  Q
    ||||||||||||| ||||||||||||||||||  ||||||  ||| ||||| |||||||||||    
T  45843652 attgaaaattaatattttgtaataaatatttatcatttataaaatctttaacatatgctctaa 45843590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 25005568 - 25005501
Alignment:
Q  147 aatttattcctctcgagattgaaaattaatgttttgtaataaatatttactatttatggaatttttaa 214  Q
    ||||||||| | | || |||| |||||||||||||||||||||||||||  |||||| |||| |||||    
T  25005568 aatttattcttttagaaattgtaaattaatgttttgtaataaatatttaaaatttatagaatctttaa 25005501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 48982881 - 48982916
Alignment:
Q  161 gagattgaaaattaatgttttgtaataaatatttac 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  48982881 gagattgaaaattaatgttttttaataaatatttac 48982916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 26819649 - 26819600
Alignment:
Q  146 taatttattcctctcgagattgaaaattaatgttttgtaataaatattta 195  Q
    |||||||||  ||| ||||||||||||||||| || ||||||||||||||    
T  26819649 taatttatttttcttgagattgaaaattaatggttagtaataaatattta 26819600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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