View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_low_2 (Length: 562)
Name: NF15169_low_2
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 16758649 - 16758990
Alignment:
| Q |
17 |
aatgattgcgttcatgattgaattggccgtaaatttagtagagttacactgtgctagtgtgatactgtaattttgataaaagctgcactttaaaacttaa |
116 |
Q |
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| T |
16758649 |
aatgattgcattcatgattgaattggccgtaaatttagtagagttacactgtgctagtgtgatactgtaattttgataaaagctgcactttaaaacttaa |
16758748 |
T |
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| Q |
117 |
caaaatcattattttctaaacttacactacgaagtgttgtggaaacaaaaaagcattgtagtgaatttgtctcggttacactgagctaatattttacatt |
216 |
Q |
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| T |
16758749 |
caaaatcattatt--ctaaacttacactacgaagtgttgtggaaacaaaaaagcattgtagtgaatttgtctcggttacac-gagcaaatattatacatt |
16758845 |
T |
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| Q |
217 |
atgctccacataacaaactatagcattttaattgcttctttaataatatatttaatccatgtatgatgtatatttatttcacgacaatcttttcctaaca |
316 |
Q |
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| T |
16758846 |
atgctccacataacaaactatagcattttaattgcttctttaataatatatttaatccatgtatgatgtatatttatttcacgacaatcttttcctaaca |
16758945 |
T |
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| Q |
317 |
aacttgtgcatttcagtgaaaccaaatgcttgtcttgcctaaact |
361 |
Q |
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| T |
16758946 |
aacttgtgcatttcagtgaaaccaaatgcttgtcttgcctaaact |
16758990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 437 - 550
Target Start/End: Original strand, 16759071 - 16759184
Alignment:
| Q |
437 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
536 |
Q |
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| T |
16759071 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
16759170 |
T |
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| Q |
537 |
gtagaacatagtat |
550 |
Q |
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| T |
16759171 |
gtagaacatagtat |
16759184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 19 - 197
Target Start/End: Original strand, 16753624 - 16753798
Alignment:
| Q |
19 |
tgattgcgttcatgattgaattggccgtaaatttagtagagttacactgtgctagtgtgatactgtaattttgataaaagctgcactttaaaacttaaca |
118 |
Q |
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| T |
16753624 |
tgattgtgtgcatgtttgaattgggtgtaaatttagtagaattacactgtgctagtt--atactgcaattttgataaaagctgcactttaaaacttaa-- |
16753719 |
T |
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| Q |
119 |
aaatcattattttctaaacttacactacgaagtgttgtggaaacaaaaaagcattgtagtgaatt--tgtctcggttacac |
197 |
Q |
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| T |
16753720 |
-aatcattatttcc-aaacttacactaggaagtgttgtggaaacaaaaaagcattgtagtgaatttgtgtctcggttacac |
16753798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 437 - 550
Target Start/End: Original strand, 16753829 - 16753938
Alignment:
| Q |
437 |
ttatcttccatccatctatgcttgagagtgtatacttgtgaaatcagacatagcaaacttcatttctctttcacttgttaaaaagatttgttaagctcaa |
536 |
Q |
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| T |
16753829 |
ttatcttccatccatct-tgtttgagagtgta-acttgtgaattcacatatagcaaacttcatttctct--cacttgttaaaaagatttgttaagctcaa |
16753924 |
T |
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| Q |
537 |
gtagaacatagtat |
550 |
Q |
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| T |
16753925 |
gaagatcatagtat |
16753938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 16759020 - 16759053
Alignment:
| Q |
385 |
ttgtgctactgcaaactttatttctcttctgcct |
418 |
Q |
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| T |
16759020 |
ttgtgctactgcaaactttatttctcttctgcct |
16759053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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