View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_low_3 (Length: 427)
Name: NF15169_low_3
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 415
Target Start/End: Complemental strand, 11631937 - 11631535
Alignment:
| Q |
13 |
aatatactttcagacaaattccatctgcaagcctacttgaaaagaagagtaattttgtccnnnnnnnnnnnnngagaattgaggtatttatgaacattgg |
112 |
Q |
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| T |
11631937 |
aatatactttcagacatattccatctgcaagcctacttgaaaagaagagtaattttgtcaaaaaaagaaaaaagagaattgaggtatttatgaacattgg |
11631838 |
T |
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| Q |
113 |
ggttgggggtgggaaacaaagcttccataggataatgggaacgacattgggggttggatcaatcaatcaattttctaataatagcttttcaatttcgata |
212 |
Q |
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| T |
11631837 |
ggttgggggtgggaaacaaagcttccataggataatgggaacgacattgggggttggatcaatcaatcaattttctaataatagcttttcaatttcgata |
11631738 |
T |
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| Q |
213 |
aaattaaaaaatatagttagtttccgaatttaatttcttgtttgagaattctgtaatgtttgtttatttcgcttttgctattatgctggaattcataact |
312 |
Q |
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| T |
11631737 |
aaattaaaaaatatagttagtttccgaatttaatttcttgtttgagaattctgtaatgtttgtttatttcgcgtttgctattatgcaggaattcataact |
11631638 |
T |
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| Q |
313 |
tgattaaggtcaggatggaataagaagcttttagcgattcaggtaacttctatatatttttaacattcactgttaactacatttatattattactcttat |
412 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11631637 |
tgattaaggtcatgatggaataagaagcttttagcgattcaggtaacttctatatatttttaacattcactgttaactacatttatattattactcttat |
11631538 |
T |
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| Q |
413 |
ttg |
415 |
Q |
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| T |
11631537 |
ttg |
11631535 |
T |
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