View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15169_low_4 (Length: 392)
Name: NF15169_low_4
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 158 - 387
Target Start/End: Complemental strand, 50789267 - 50789043
Alignment:
| Q |
158 |
attttgtactttacgcgttgagctgaaaaactgaactttgttgtttcaaaccttggaagtggatttttgctttcgattcatattaaattaaatttagaat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50789267 |
attttgtactttacgcgttgagctgaaaaactgaactttgttgtttcaaaccttggaagtggatttttgctttcgattcatattaaattaaatttagaat |
50789168 |
T |
|
| Q |
258 |
ggtctcaaattttctgcattttgacagtgatttttatatcatgttttagctnnnnnnnnttgtacacttctaagaagtcttagatgttaatatctctaca |
357 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50789167 |
ggtctcaaatattctgcattttgacagtgatttttatatcatgttttagct-aaaaaaattgtacacttctaagaagtcttagatgttaatatct----t |
50789073 |
T |
|
| Q |
358 |
tacatacatgccttgattctggtctctgct |
387 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
50789072 |
tacatacatgccttgattctggtttctgct |
50789043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 50789863 - 50789726
Alignment:
| Q |
1 |
tttcagcttaattagttcctctattataatttacgcacataattagtcccctaaaattcacatgcatttgacagtttgcctacctaagtctttgaga--g |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50789863 |
tttcagcttaattagttcctctattataatttacgcacataattagtcccctaaaattcacatgcatttgacagtttgcctacctaagtctttgggatct |
50789764 |
T |
|
| Q |
99 |
aaatttggcaaatgttgtaagttatttggtcccaaatt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50789763 |
aaatttggcaaatgttgtaagttatttggtcccaaatt |
50789726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University