View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15169_low_5 (Length: 385)
Name: NF15169_low_5
Description: NF15169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15169_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 33643866 - 33643531
Alignment:
| Q |
10 |
tgagatgaaacaattcataaatgcagctgacatggtggttccaacatgagattttgatgtgtatctcacataaatatggtttttcaaatggataacgtga |
109 |
Q |
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| T |
33643866 |
tgagatgaaacaattcataaatgcagctgacatggtggttccaacatgagattttgatgtatatctcacataaatatggtttttcaaatggataacgtga |
33643767 |
T |
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| Q |
110 |
ggattatggattgtgtatccctcttcccttcttcaattgatcctttccctcagcatttatggagcaaagaacataaatgagcatgaggctacacatccaa |
209 |
Q |
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| T |
33643766 |
ggattatggattgtgtatccctcttcccttcttcaat---tcctttccctcagcatttatggagcaaagaacataaatgagcatgaggctacacatccaa |
33643670 |
T |
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| Q |
210 |
tatgcattcaatgtggatgtaaatgtactagaggtagtagtagatttaagcaatgccattattaaagtttggagagtggtcaatagttgggtggttggaa |
309 |
Q |
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| T |
33643669 |
tatgcattcaatgtggatgtaaatgtactagag---gtagtagatttaagcaatgccattattaaagtttggagagtggtcaatagttgggtggttggaa |
33643573 |
T |
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| Q |
310 |
cttggaagtaaagtaactcacaccactggaaatatttgcaag |
351 |
Q |
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| T |
33643572 |
cttggaagtaaagtaactcacaccactggaaatatttgcaag |
33643531 |
T |
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