View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_high_1 (Length: 600)
Name: NF1516_high_1
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_1 |
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| [»] scaffold1185 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 14 - 583
Target Start/End: Original strand, 35618745 - 35619315
Alignment:
| Q |
14 |
agaccgaatcttggaagacgcgtttgtttcttgccgtccatacagcccacacagaagcaaaccaaataat----atgtatgagtgagtaactataggcaa |
109 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
35618745 |
agaccgaatcttggaagacgcgtttgtttctttccgtccatacaactgacacagaagcaaaccaaataattcttatgtatgagcgagtaactataggcaa |
35618844 |
T |
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| Q |
110 |
gccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcagcaaatgagcccaaagcgaactg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35618845 |
gccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcagcaaatgagcccaaagcgaactg |
35618944 |
T |
|
| Q |
210 |
aaagtatcacaatttaaaaatagatgagtcgcaaagtctgtttcccctcacccaaccacacacaccgattcctgaacctggagaatgcgccaacgcatca |
309 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| | || || |
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| T |
35618945 |
aaagtatcacaatttaaaaatagatgagtcgcaaattctgtttccccacacccagccacacacaccgattcctgaacctagagaatgcgccgccacacca |
35619044 |
T |
|
| Q |
310 |
aattatctttagttgaaagtctattatgaagaagacgccacatgaacaaagagacttttgtagggatatactttgtgaaaagttgtaatnnnnnnngatg |
409 |
Q |
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|| |||||||||||| |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35619045 |
aactatctttagttggaagtatgttgtgaagaagacgccacatgaacaaagagacttttgtagggatatactttgtgaaaagttgtaataaaaaaagatg |
35619144 |
T |
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| Q |
410 |
gttagagttagttcagtgggcttataaacaaactgttagagtcggttagatatagcaacagacttatccattatccattttctgtatcagtatattatac |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35619145 |
gttagagttagttcagtgggcttataaacaaactgttagagtcggttagatatagcaacagacttatccattatccattttctgtatcagta---tatat |
35619241 |
T |
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| Q |
510 |
acttccttgctgaacattttgtttttcatgcaatgagaatggatcttgcttctgttcttcttttcccctctctt |
583 |
Q |
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| T |
35619242 |
acttccttgctgaacattttgtttttcatgcaatgagaatggatcttgcttctgttcttcttttcccctctctt |
35619315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 16587525 - 16587375
Alignment:
| Q |
88 |
atgagtgagtaactataggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcag |
187 |
Q |
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| T |
16587525 |
atgagtgagtgactctagacaagccagtcatattagtatattgaatgaaatgatttcgaaagtcacctaaatgaaccgaagaaatacccaaccaatgcca |
16587426 |
T |
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| Q |
188 |
caaatgagcccaaagcgaactgaaagtatcacaatttaaaaatagatgagt |
238 |
Q |
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| T |
16587425 |
cacatgagcccaaagcgaactgaatatgtcacaacctaaaaacagatgagt |
16587375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1185 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1185
Description:
Target: scaffold1185; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 1957 - 1901
Alignment:
| Q |
101 |
tataggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctga |
157 |
Q |
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| T |
1957 |
tataggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctga |
1901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 14392492 - 14392567
Alignment:
| Q |
103 |
taggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaa |
178 |
Q |
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| T |
14392492 |
taggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctgataaaaccgaagaaatacccaa |
14392567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 169
Target Start/End: Original strand, 2821008 - 2821117
Alignment:
| Q |
64 |
acagaagcaaaccaaataat----atgtatgagtgagtaactataggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctgaaa |
159 |
Q |
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||||||||||||||||| || ||| ||||||||| ||| |||| || || ||||||| ||||||||| | ||||||| || ||||||||||||| |
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| T |
2821008 |
acagaagcaaaccaaattattcgcatgaatgagtgagcgactctaggaaatcctgccatatcagtaaattgaattaaatgatatctaatgtcacctgaac |
2821107 |
T |
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| Q |
160 |
gaactgaaga |
169 |
Q |
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| T |
2821108 |
gaaccgaaga |
2821117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 3156456 - 3156342
Alignment:
| Q |
123 |
gtaaattgagtgaaatgatgtcgaatgtcacctgaaagaactgaagacatgcccaaccattgcagcaaatgagcccaaagcgaactgaaagtatcacaat |
222 |
Q |
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||||||||||| ||||||||||||||||||||||| || | |||| || ||| |||| |||| || |||| ||||||| ||| ||||||| ||||| |
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| T |
3156456 |
gtaaattgagtaaaatgatgtcgaatgtcacctgagggagccaaagaaataccccaccaatgcaacacatga-cccaaagagaattgaaagtgtcacatc |
3156358 |
T |
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| Q |
223 |
ttaaaaatagatgagt |
238 |
Q |
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|||||| |||||||| |
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| T |
3156357 |
ctaaaaacagatgagt |
3156342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 37983771 - 37983825
Alignment:
| Q |
103 |
taggcaagccagccatattcgtaaattgagtgaaatgatgtcgaatgtcacctga |
157 |
Q |
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||||||| || |||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
37983771 |
taggcaaacccgccatattagtaaactgaaggaaatgatgtcgaatgtcacctga |
37983825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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