View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1516_high_10 (Length: 419)
Name: NF1516_high_10
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 28872630 - 28872941
Alignment:
| Q |
1 |
ttgtcgatttattgattttgtactaatgtattattaagtacaatttctctttaaaattagagaagctaaactaaatagttctttaatgcaaaattaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28872630 |
ttgtcgatttattgattttgtactaaagtattatttagtatagattctctttaaaattagagaagctaaactaaatagttctttagtgcaaaattaataa |
28872729 |
T |
|
| Q |
101 |
acaacgatctaatatttgattagctaaactatttag-tttagcttctaaaaaagactttatgaatgcaaatgtactttcatcaaagtactatttgatttg |
199 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28872730 |
acaacaatctaatatttgattagctaaactatttagatttagcttctaaaaaagactttatgaatgcaaatgtactttcatcaaagtactatttgatttg |
28872829 |
T |
|
| Q |
200 |
acttctcaaacacatttcatt----caaatgtagt---ta-ttggattttgtactaattacatgtcattttatcactttttctcaatgtactcactctta |
291 |
Q |
| |
|
|||||| | |||||||||||| |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28872830 |
acttctgagacacatttcattcatgcaaatgtagtacatatttggattttgtactgattacatgtcattttatcactttttctcaatgcactcactctta |
28872929 |
T |
|
| Q |
292 |
cctggtacgacc |
303 |
Q |
| |
|
||| |||||||| |
|
|
| T |
28872930 |
ccttgtacgacc |
28872941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University