View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_high_13 (Length: 400)
Name: NF1516_high_13
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 107 - 313
Target Start/End: Complemental strand, 43615955 - 43615749
Alignment:
| Q |
107 |
aaaagaaacacactctaagacgtcaagtcaatatcatcaaaccaactcaagtgggataattcataaaattatcttgaatatggttttgggttcaatgaaa |
206 |
Q |
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| T |
43615955 |
aaaagaaacacactctaagacgtcaagtcaatatcatcaaaccaactcaagtgggataattcataaaattatcttgaatatggttttgggttcaatgaaa |
43615856 |
T |
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| Q |
207 |
ggtaagtgggataatttcatattttgacctttggtggataactcttagagcccaaaactgttgccctgttgccaagacaggtttctcagcatgttatgcc |
306 |
Q |
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| T |
43615855 |
ggtaagtgggataatttcatattttgacctttggtggataactcttagagcccaaaactgttgccctgttgccaagacaggtttctcagcatgttatgcc |
43615756 |
T |
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| Q |
307 |
aagacag |
313 |
Q |
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||||||| |
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| T |
43615755 |
aagacag |
43615749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 276 - 391
Target Start/End: Complemental strand, 43615759 - 43615644
Alignment:
| Q |
276 |
tgccaagacaggtttctcagcatgttatgccaagacagtttttgacctttgaaatgtatcgacaatactgcattatcaagctgaaggttgtacggcgtaa |
375 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
43615759 |
tgccaagacaggtttcccagcatgttatgccaagacagtttttgacctttgaaatgtatcgacaatactacattatcaagctgaaggttgtatggcgtaa |
43615660 |
T |
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| Q |
376 |
tgtgcatgatattctt |
391 |
Q |
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| T |
43615659 |
tgtgcatgatattctt |
43615644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43616038 - 43615949
Alignment:
| Q |
1 |
tttcaaccatatgattgtatatgttttagttcacaaaattatcttttcttaagaattaaactaattcacagaaatcagtaccaaaaagaa |
90 |
Q |
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| T |
43616038 |
tttcaaccatatgattgtatatgttttagttcacaaaattatcttttcttaagaattaaactaattcacagaaatcagtaccaaaaagaa |
43615949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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