View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_high_17 (Length: 370)
Name: NF1516_high_17
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 42979591 - 42979933
Alignment:
| Q |
11 |
gaacctgtgcataaacaactgttaaaccttggaaactctattattcaatttaaaataaaccatcaatgtaaccactaaagtaccatctctttccaattca |
110 |
Q |
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| T |
42979591 |
gaacctatgcataaacaactgttaaaccttggaaactctattattcaatttaaaataaaccatcaatgtaaccactaaagtaccatctctttccaattca |
42979690 |
T |
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| Q |
111 |
ataactaaggtaaataaatgaattaagtaagtagcccctaaaaaatgtgaaagaaacaaaacacggcacaataaaataaacattagagcagcgagaaatg |
210 |
Q |
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| T |
42979691 |
ataactaaggtaaataaatgaattaagtaagtagcccctaaaatatgtgaaagaaacaaaacacggcacaataaaataaacattagagcagcgagaaatg |
42979790 |
T |
|
| Q |
211 |
caaagctcaccggaacacagtaaagcaatctccgttcccagatcggcgtatcagcagagcaaccgacaggaattgaatgttgacaaaaatccgtaaattt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42979791 |
caaagctcaccggaacacagtaaagcaatctccgttcccagatcggcgtatcagcagagcaaccgacaggaattgaatgttgacaaaaatccgtaaattt |
42979890 |
T |
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| Q |
311 |
attggtcctccacaccgaaccatccttaaatatacattgacat |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42979891 |
attggtcctccacaccgaaccatccttaaatatacattgacat |
42979933 |
T |
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