View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1516_high_28 (Length: 308)
Name: NF1516_high_28
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 35725815 - 35725949
Alignment:
| Q |
12 |
atcatcaacatcacaaacatgacacatcaataatgactagataacaagagaaaacatcaaatttcgacgtgtaacctttctgcttgttttgttcctcaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35725815 |
atcatcaacatcacaaacatgacacatcaagaatgactagataacaagagaaaacatcaaatttcgacgtgtaacctttctgcttgttttgttcctcaaa |
35725914 |
T |
|
| Q |
112 |
atattttgttgtcactattaatttaactactaatt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35725915 |
atattttgttgtcactattaatttaactactaatt |
35725949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University