View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1516_high_36 (Length: 252)

Name: NF1516_high_36
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1516_high_36
NF1516_high_36
[»] chr2 (13 HSPs)
chr2 (12-163)||(28213658-28213809)
chr2 (12-184)||(28222444-28222618)
chr2 (12-156)||(32311014-32311160)
chr2 (36-223)||(32813371-32813573)
chr2 (186-251)||(28213869-28213934)
chr2 (160-252)||(28222349-28222436)
chr2 (71-156)||(32563749-32563836)
chr2 (62-156)||(32792594-32792690)
chr2 (96-221)||(32799249-32799387)
chr2 (101-150)||(32785122-32785171)
chr2 (12-46)||(32790305-32790339)
chr2 (12-67)||(32799188-32799243)
chr2 (98-130)||(28211804-28211836)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 28213658 - 28213809
Alignment:
Q  12 atcacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttgcaaaaatatacttcaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  28213658 atcacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagcttacaaaaatatacttcaa 28213757  T
Q  112 taccttggaatccaagttttattaaggcataacaaaacactttgaattattg 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  28213758 taccttggaatccaagttttattaaggcataacagaacactttgatttattg 28213809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 28222618 - 28222444
Alignment:
Q  12 atcacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttc 109  Q
    ||||||||||||| ||||||||| | |||||||||  ||||| |||||| |||||  | ||||||||||||||||||||||||   ||||||||||||||    
T  28222618 atcacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttc 28222519  T
Q  110 aataccttggaatccaagttttattaaggcataacaaaacactttgaattattgcagccttgcaacactagacta 184  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  28222518 aataccttggaatccaagttttattaaggcataacagaacactttgatttattgcagccttgcaacactagacta 28222444  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 32311160 - 32311014
Alignment:
Q  12 atcacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagct--tgcaaaaatatacttc 109  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||  | |||||| | |||||||||||||||||||||||  | ||||||||||||||    
T  32311160 atcacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttc 32311061  T
Q  110 aataccttggaatccaagttttattaaggcataacaaaacactttga 156  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||||||    
T  32311060 aataccttggaatccaagttttaataaaacataacagaacactttga 32311014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 32813371 - 32813573
Alignment:
Q  36 aatatcatatcatagaattattcctagatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttcaataccttggaatccaagttttat 133  Q
    |||||||||||  ||||| |||  | |||||| | ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||     
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  134 taaggcataacaaaacactttg----------aattattgcagccttgcaacactagactaaaca---tttaacacagcaccatcaaaatttataaattc 220  Q
    |||  ||||||| |||||||||          | |||||||||||||||||||||| | ||||||   ||||||||||  ||||||||||  ||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  221 tgt 223  Q
    |||    
T  32813571 tgt 32813573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 28213869 - 28213934
Alignment:
Q  186 acatttaacacagcaccatcaaaatttataaattctgtcaacatttaacacatggccaaaactacc 251  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  28213869 acatttaacacagtaccatcaaaatctataaattctgtaaacatttaacacatggccaaaactacc 28213934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 28222436 - 28222349
Alignment:
Q  160 attgcagccttgcaacactagactaaacatttaacacagcaccatcaaaatttataaattctgtcaacatttaacacatggccaaaactacca 252  Q
    ||||||||||||||| |||||||     ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  28222436 attgcagccttgcaatactagac-----atttaacacagtaccatcaaaatctataaattctgtaaacatttaacacatggctaaaactacca 28222349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 32563749 - 32563836
Alignment:
Q  71 ttgtaagagttgaatagggagcttgcaaaa--atatacttcaataccttggaatccaagttttattaaggcataacaaaacactttga 156  Q
    ||||||||| ||||||||||||||  ||||  |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  32563749 ttgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacagaacactttga 32563836  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 32792594 - 32792690
Alignment:
Q  62 gatctcaagttgtaagagttgaatagggagcttg--caaaaatatacttcaataccttggaatccaagttttattaaggcataacaaaacactttga 156  Q
    |||||| | ||||||||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||    
T  32792594 gatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagttttaataaagcataacagaacaatttga 32792690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 32799249 - 32799387
Alignment:
Q  96 caaaaatatacttcaataccttggaatccaagttttattaaggcataacaaaacactttg----------aattattgcagccttgcaacactagactaa 185  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||          | |||||||||||||||||||||||| |||    
T  32799249 caaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagagtaa 32799348  T
Q  186 aca---tttaacacagcaccatcaaaatttataaattct 221  Q
    |||   ||||| ||||  |||  ||||||||||||||||    
T  32799349 acatattttaaaacagtgccacaaaaatttataaattct 32799387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 32785122 - 32785171
Alignment:
Q  101 atatacttcaataccttggaatccaagttttattaaggcataacaaaaca 150  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  32785122 atatacttcaataccttggaatccaagttttaataaggcataacagaaca 32785171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 32790305 - 32790339
Alignment:
Q  12 atcacagaagcagttgtgacttgcaatatcatatc 46  Q
    |||||||||||||||||||||||||||||||||||    
T  32790305 atcacagaagcagttgtgacttgcaatatcatatc 32790339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 32799188 - 32799243
Alignment:
Q  12 atcacagaagcagttgtgacttgcaatatcatatcatagaattattcctagatctc 67  Q
    |||||| || |||||||||||||||||||||||||  ||||| |||||| ||||||    
T  32799188 atcacataatcagttgtgacttgcaatatcatatctaagaatcattccttgatctc 32799243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 28211804 - 28211836
Alignment:
Q  98 aaaatatacttcaataccttggaatccaagttt 130  Q
    |||||| ||||||||||||||||||||||||||    
T  28211804 aaaatacacttcaataccttggaatccaagttt 28211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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