View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1516_high_41 (Length: 248)

Name: NF1516_high_41
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1516_high_41
NF1516_high_41
[»] chr2 (14 HSPs)
chr2 (100-248)||(28171464-28171612)
chr2 (103-248)||(28183061-28183206)
chr2 (6-89)||(28171653-28171736)
chr2 (186-248)||(28174671-28174733)
chr2 (54-135)||(28221991-28222068)
chr2 (54-135)||(32310543-32310620)
chr2 (54-135)||(32786652-32786729)
chr2 (79-157)||(28158708-28158786)
chr2 (79-157)||(28169277-28169355)
chr2 (79-135)||(28214237-28214293)
chr2 (54-135)||(32306413-32306490)
chr2 (54-135)||(32813863-32813940)
chr2 (78-127)||(28177397-28177446)
chr2 (54-135)||(32564200-32564277)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 28171612 - 28171464
Alignment:
Q  100 tgacactgcagatgacaacacttgcatgtatgacattccgttgctgttagcgtgaacattcattgggttcaaaatcactaacgtcgaaaacttgttgatt 199  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28171612 tgacactgcagatgacaacacttgcatgaatgacattccgttgctgttagcgtgaacattcattgggttcgaaatcactaacgtcgaaaacttgttgatt 28171513  T
Q  200 ctgctattgatattcttgttgtcttgacagttttgcctcatctgactaa 248  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||    
T  28171512 gtgctattgatattcttgttgtcttgacagttttgcctcatcttactaa 28171464  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 103 - 248
Target Start/End: Complemental strand, 28183206 - 28183061
Alignment:
Q  103 cactgcagatgacaacacttgcatgtatgacattccgttgctgttagcgtgaacattcattgggttcaaaatcactaacgtcgaaaacttgttgattctg 202  Q
    |||||||||||||||| ||| |||||||||||| || ||  |||||| |||| |||||||||| || |||||||| |||||| |||||||||||||||||    
T  28183206 cactgcagatgacaacgcttccatgtatgacatcccttttttgttagagtgagcattcattggcttaaaaatcacaaacgtcaaaaacttgttgattctg 28183107  T
Q  203 ctattgatattcttgttgtcttgacagttttgcctcatctgactaa 248  Q
    ||  ||||||||||||||||| ||||||||||||||||||||||||    
T  28183106 ctgctgatattcttgttgtctggacagttttgcctcatctgactaa 28183061  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 28171736 - 28171653
Alignment:
Q  6 agaactgttctctccagcaagccatcagttgttgatcagcaaaaggtacaacaaactctgatagtagcgagaaagtgtcaaatg 89  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  28171736 agaactgttctctccagcaagccatcagttgttgatcagcgaaaggtacaaaaaactctgatagtagctagagagtgtcaaatg 28171653  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 28174733 - 28174671
Alignment:
Q  186 aaaacttgttgattctgctattgatattcttgttgtcttgacagttttgcctcatctgactaa 248  Q
    ||||||||| |||||||||  ||||| ||||||||||| |||||||| |||||||||||||||    
T  28174733 aaaacttgtcgattctgctgctgatagtcttgttgtctggacagtttagcctcatctgactaa 28174671  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 28222068 - 28221991
Alignment:
Q  54 caacaaactctgatagtagcgagaaagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||||||||||||| |||    ||||||| | |||||| ||||||||||||||||||||  ||||| ||||||||||    
T  28222068 caacaaactctgatagtagtgag----tgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacat 28221991  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 32310620 - 32310543
Alignment:
Q  54 caacaaactctgatagtagcgagaaagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||||||||||||| |||    ||||||| | |||||| |||| |||||||||||||||  ||||||||||||||||    
T  32310620 caacaaactctgatagtagtgag----tgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacat 32310543  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 32786652 - 32786729
Alignment:
Q  54 caacaaactctgatagtagcgagaaagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||||||||||||| |||    ||||||| | |||||| |||| |||||||||||||||  ||||||||||||||||    
T  32786652 caacaaactctgatagtagtgag----tgtcaaaagatgctccagatggcactgcagatgacaatgcttgcatgtatgacat 32786729  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 28158786 - 28158708
Alignment:
Q  79 agtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacattccgttgctgttagcgtgaaca 157  Q
    ||||||||||| |||| | |||||||||||||| |||||| |||||||| |||||||  | || ||||||| |||||||    
T  28158786 agtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttttctgttagagtgaaca 28158708  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 28169355 - 28169277
Alignment:
Q  79 agtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacattccgttgctgttagcgtgaaca 157  Q
    ||||||||||| |||| | |||||||||||||| |||||| |||||||| |||||||  | || ||||||| |||||||    
T  28169355 agtgtcaaatgatgcttcagatgacactgcagacgacaactcttgcatgcatgacatcacttttctgttagagtgaaca 28169277  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 28214237 - 28214293
Alignment:
Q  79 agtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||| | |||||| ||||||||||||||||||||  ||||| ||||||||||    
T  28214237 agtgtcaaaagatgctccagatgacactgcagatgacaatgcttgcttgtatgacat 28214293  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 32306490 - 32306413
Alignment:
Q  54 caacaaactctgatagtagcgagaaagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||||||||||||| |||    |||||||   |||||| |||| |||||||||||||||  ||||||||||||||||    
T  32306490 caacaaactctgatagtagtgag----tgtcaaaatatgctccagatggcactgcagatgacaatgcttgcatgtatgacat 32306413  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 32813863 - 32813940
Alignment:
Q  54 caacaaactctgatagtagcgagaaagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||||||||||||| |||    ||||||| | |||||| ||||  ||||||||||||||  ||||||||||||||||    
T  32813863 caacaaactctgatagtagtgag----tgtcaaaagatgctccagatggtactgcagatgacaatgcttgcatgtatgacat 32813940  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 28177446 - 28177397
Alignment:
Q  78 aagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatg 127  Q
    |||||||||||| ||||   ||||||||||||||||||||| ||||||||    
T  28177446 aagtgtcaaatgatgcttaagatgacactgcagatgacaacgcttgcatg 28177397  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 32564200 - 32564277
Alignment:
Q  54 caacaaactctgatagtagcgagaaagtgtcaaatgctgctccggatgacactgcagatgacaacacttgcatgtatgacat 135  Q
    ||||||||||||||||||| |||    |||||||   |||||| ||||  ||||||||||||||  ||||||||||||||||    
T  32564200 caacaaactctgatagtagtgag----tgtcaaaaaatgctccagatggaactgcagatgacaatgcttgcatgtatgacat 32564277  T

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