View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_high_49 (Length: 238)
Name: NF1516_high_49
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 7922333 - 7922558
Alignment:
| Q |
17 |
tctttatactgttcatatttcagagacttgactcgatattgttctaacttctacgaggtctataacaaacatgaactaattatattattatagagattta |
116 |
Q |
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| T |
7922333 |
tctttatactgttcatatttcagagacttgactcgatattgttctaacat-tacgaggtctataacaaacatgaactaattatattattatagagattta |
7922431 |
T |
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| Q |
117 |
aactagaaaaataacaacagt-----nnnnnnnnnnnnnnnttgtgtttcaagaagaaagatgactttcaattgataatcaaagattcattacagatgat |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7922432 |
aactagaaaaataacaacagtaaaaaaaaaaaaaaaaaaaactgtgtttcaagaagaaagatgactttcaattgataatcaaagattcattacagatgat |
7922531 |
T |
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| Q |
212 |
aagcaacattgggtctgagatatttcc |
238 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7922532 |
aagcaacattgggtctgagatatttcc |
7922558 |
T |
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