View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1516_high_7 (Length: 460)
Name: NF1516_high_7
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Complemental strand, 29145811 - 29145382
Alignment:
| Q |
13 |
aaaatcaacaacattaaaatctcatatttgaattccaatccgtaaatgcgtgacatatttattgaccgttcgatcttaaattgaacagtgaaagattatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29145811 |
aaaatcaacaacattaaaatctcatatttgaattccaatccgtaaatgcgtgacatatttattgaccgttcgatcttaaattgaacagtgaaagattatt |
29145712 |
T |
|
| Q |
113 |
taaagatggtttcaaatcgatgatcgagatcaattagtgcgtttaaatacattttttaaatgtacataatcgagtccttaccttgcattttagagatgtg |
212 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29145711 |
taaagatagttttaaatcgatgatcgagatcaattagtgcgtttaaatacattttttaaatgtacataatcgagtccttaccttgcattttagagatgtg |
29145612 |
T |
|
| Q |
213 |
tttcctcagcttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgctcaaatatttactcaaatcatcaattattgaacattcaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29145611 |
tttcctcagcttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgctcaaatatttactcaaatcatcaattattgaacattcaa |
29145512 |
T |
|
| Q |
313 |
gttgtggacaacggtccaattcaattcgcttcataaaactagtcatggttattctacaaatatatgcttccaaacttgcttagttatattcacgaagcat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29145511 |
gttgtggacaacggtccaattcaattcgcttcataaaactagtcatggttattctacaaatatatgcttccaaacttgcttagttatattcacgaagcat |
29145412 |
T |
|
| Q |
413 |
atcataaatttaaaattagagagcccttag |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29145411 |
atcataaatttaaaattagagagcccttag |
29145382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 40454106 - 40454024
Alignment:
| Q |
191 |
taccttgcattttagagatgtgtttcctcagcttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgc |
273 |
Q |
| |
|
||||||||||| | |||| |||||||| | |||||||||||| ||||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
40454106 |
taccttgcattctggagagatgtttcctgaccttcccttcacaacctttacaatgcagagaaaccctcaacaccacaacctgc |
40454024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 28229383 - 28229335
Alignment:
| Q |
225 |
cccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgc |
273 |
Q |
| |
|
||||||||| | ||| ||||||| |||||||||||| |||||||||||| |
|
|
| T |
28229383 |
cccttcacaacttttacaatgcagagaaaccctcaacaccacaacctgc |
28229335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University