View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1516_high_8 (Length: 444)
Name: NF1516_high_8
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 26 - 428
Target Start/End: Original strand, 44690646 - 44691050
Alignment:
| Q |
26 |
aagaagaaaaataaatcctcatatggggtttgctattctacaaaaaccacttcatttannnnnnnattcactcatcaataatatgaaattattcagcaac |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
44690646 |
aagaagaaaaataaatcctcatatggggtttgctattctacaaaaaccacttcatttatttttt-attcactcatcaataacatgaaattattcagcaac |
44690744 |
T |
|
| Q |
126 |
aattcttctatgatatcgaagtaataactaatatgatatgtaaaaaccacttcattagattaaagatcttgctttcgnnnnnnnnnnnnnnga------- |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | |
|
|
| T |
44690745 |
aattattctatgatatcgaagtaataactaatatgatatgtaaaaaccacttcattagattaaacatcttgcttccggaaaaaaaaaaaaaaaaaaaaaa |
44690844 |
T |
|
| Q |
219 |
cgtgttttcccttcttctcttccgttgtcgcccatgttaatacgaaaaggataatagttccaaacatcgaagttccaccattggagcttcctctacaaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44690845 |
cgtgttttcccttcttctcttccgttgtcgcccatgttaatacgaaaaggataatagttccaaacatcgaagttccaccattggagcttcctctacaaga |
44690944 |
T |
|
| Q |
319 |
aaagatccagcattaaactcgcagctcttgttatcttcatcctgggaagaatatagttaaatcctagttgttcctcaccataacaagagcagccctctat |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
44690945 |
aaagatccagcattaaactcgcagttcttgttatcttcatcctggggagaatatagttaaatcctagttgttcctcaacat----agagcagccctctat |
44691040 |
T |
|
| Q |
419 |
gggcattaat |
428 |
Q |
| |
|
|||||||||| |
|
|
| T |
44691041 |
gggcattaat |
44691050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University