View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_high_9 (Length: 440)
Name: NF1516_high_9
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Original strand, 23597567 - 23597985
Alignment:
| Q |
8 |
gaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597567 |
gaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataag |
23597666 |
T |
|
| Q |
108 |
aagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597667 |
aagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagg |
23597766 |
T |
|
| Q |
208 |
gtatttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtgg |
307 |
Q |
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| T |
23597767 |
gtatttgcaaccctatcattgcaaggatgtatcaaggtgctggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtgg |
23597866 |
T |
|
| Q |
308 |
tgctggccccaaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23597867 |
tgctggccccaaaattgaggaagttgattaagcggaacttttgtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcct |
23597966 |
T |
|
| Q |
408 |
agtaatatgtatgtgtttt |
426 |
Q |
| |
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| T |
23597967 |
agtaatatgtatgtgtttt |
23597985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 23588712 - 23589087
Alignment:
| Q |
5 |
aaagaaggtggaggccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgat |
104 |
Q |
| |
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|||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23588712 |
aaagaaagtggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgat |
23588811 |
T |
|
| Q |
105 |
aagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23588812 |
aagaagaaaattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctgg |
23588911 |
T |
|
| Q |
205 |
agggtatttgcaaccctatcattgcaaggatgtatcaaggtgttggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaag |
304 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| |
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| T |
23588912 |
agggcatttgcaaccctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaag |
23589011 |
T |
|
| Q |
305 |
tggtgctggccccaaaattgaggaagttgattaagcggaacttttgtaatggaatttatgtgtggttcaggatttt |
380 |
Q |
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| T |
23589012 |
cggtgctggccccaaaattgaggaagttgattaagctaaactttgttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 246
Target Start/End: Original strand, 8018423 - 8018633
Alignment:
| Q |
36 |
aactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgaggggg |
135 |
Q |
| |
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||||| || |||||||||||||||||||| |||||||| ||||||| ||| ||| | || |||| || || ||||| ||||| ||||| ||||| | | |
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| T |
8018423 |
aactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaagaagattgatgatgcaattgacgctg |
8018522 |
T |
|
| Q |
136 |
ctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggat |
235 |
Q |
| |
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| ||||| |||||||| | || || | | |||||||||||| ||||| || ||||||||||| || ||| | |||||||||| |||||||| | ||| |
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| T |
8018523 |
caattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagat |
8018622 |
T |
|
| Q |
236 |
gtatcaaggtg |
246 |
Q |
| |
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||||||||||| |
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| T |
8018623 |
gtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
162 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
246 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| || || ||| | ||||||||||||||||| | |||||| ||||||| |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 8101828 - 8101615
Alignment:
| Q |
33 |
gagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattgaagatgctattgagg |
132 |
Q |
| |
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||||||||||| ||||||||||| ||||| || |||||||| ||||| ||| ||| | || | | || |||||| | ||||| ||||| ||||||| |
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| T |
8101828 |
gagaactatgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagg |
8101729 |
T |
|
| Q |
133 |
gggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaag |
232 |
Q |
| |
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| || ||||||||| | |||| ||| || |||| || || ||||| ||||| ||||||||||||||||| ||| || || ||||| |||||||||| |
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| T |
8101728 |
gagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaa |
8101629 |
T |
|
| Q |
233 |
gatgtatcaaggtg |
246 |
Q |
| |
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|||||| ||||||| |
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| T |
8101628 |
gatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 17706803 - 17706893
Alignment:
| Q |
156 |
aatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
246 |
Q |
| |
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||||| |||| |||||| ||||| |||||||||||||||||||| | || ||| | ||||||||||||||||| | |||||| ||||||| |
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| T |
17706803 |
aatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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