View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_13 (Length: 410)
Name: NF1516_low_13
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 195 - 372
Target Start/End: Complemental strand, 23251453 - 23251276
Alignment:
| Q |
195 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
294 |
Q |
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| T |
23251453 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
23251354 |
T |
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| Q |
295 |
ttgcttagcctgtattaagttgaaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
372 |
Q |
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| T |
23251353 |
ttgcttagcctgtattaagttgaagaaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
23251276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 23257659 - 23257464
Alignment:
| Q |
1 |
agtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttat |
100 |
Q |
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||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23257659 |
agtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatggaacttctaaacttaatgtgtttggtttaattttat |
23257560 |
T |
|
| Q |
101 |
ttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttc |
196 |
Q |
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| T |
23257559 |
ttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagtttc |
23257464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 23251685 - 23251491
Alignment:
| Q |
2 |
gtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaat-tttat |
100 |
Q |
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|||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||| || || |||||||| | ||||| |
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| T |
23251685 |
gtatcatgatcagtatgaagatattcatatacaagactttcaagatgatgaggtatcactatggaacttttaaatttaattgatttggttttacatttat |
23251586 |
T |
|
| Q |
101 |
ttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaattt |
195 |
Q |
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| T |
23251585 |
ttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaattt |
23251491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 23266220 - 23266063
Alignment:
| Q |
1 |
agtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||| |
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| T |
23266220 |
agtatcatgatcaatatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaattttctttgtttggtttaactttat |
23266121 |
T |
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| Q |
101 |
ttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaa |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
23266120 |
ttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaa |
23266063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 220 - 372
Target Start/End: Complemental strand, 23266001 - 23265846
Alignment:
| Q |
220 |
ttttattatatatgaaagaa-aatataattttggaatttcagctattgatatagaaaatataatctattgccatctttgcttagcctgtat--taagttg |
316 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || || ||||||| |
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| T |
23266001 |
ttttattatatatgaaagaagaatataactttggaatttcagcttttgatatagaaaatataatctattgccatccttgcttagcttgcattataagttg |
23265902 |
T |
|
| Q |
317 |
aaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
372 |
Q |
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|| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
23265901 |
aaagaggtaatatagcgtctcttgtcttattcttctcttctcttttgtaggacttt |
23265846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 23247260 - 23247079
Alignment:
| Q |
15 |
tatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtaga |
114 |
Q |
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||||| ||| ||||| | ||||| |||||||||||||||||||||||||||||||| |||| || |||| ||| ||||| |||| |||||||||||||| |
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| T |
23247260 |
tatgacgatattcatgtacaagattttcaagatgatgaggtatcactatggaacttttaaatttaatgtcttttgtttacttttctttttggattgtagg |
23247161 |
T |
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| Q |
115 |
ataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaatttc |
196 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||| || || |||||||||||| |
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| T |
23247160 |
ataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaaggaatttc |
23247079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 23283282 - 23283160
Alignment:
| Q |
15 |
tatgaagattttcattttcaagactttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttgg-tttaattttatttttggattgtag |
113 |
Q |
| |
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|||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||||||| || | | |||||| ||| |||| |||||||||||||| |
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| T |
23283282 |
tatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaagagtttggttttgtttttttttttggattgtag |
23283183 |
T |
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| Q |
114 |
aataggaaatgtctatactacaa |
136 |
Q |
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||| | ||||||||||||||||| |
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| T |
23283182 |
aattgaaaatgtctatactacaa |
23283160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 23289601 - 23289502
Alignment:
| Q |
39 |
tttcaagatgatgaggtatcactatggaacttctaaactttatgtgtttggtttaattttatt--tttggattgtagaataggaaatgtctatactacaa |
136 |
Q |
| |
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||||||||||| |||||||| ||||||||||||| ||||| | |||||||||||| |||| || ||||||||||| || | |||||||| |||||||| |
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| T |
23289601 |
tttcaagatgaagaggtatcgctatggaacttctgaacttgaagtgtttggtttacttttttttgtttggattgtaaaacggaaaatgtctgtactacaa |
23289502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 23246898 - 23246837
Alignment:
| Q |
310 |
taagttgaaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggactt |
371 |
Q |
| |
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||||||| ||||||||| | |||| |||||||||| | ||||||||||||||||||||||| |
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| T |
23246898 |
taagttgtaggaggtaaaatagtgtatcttgtcttaattttctcttctcttttgtaggactt |
23246837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 23247032 - 23246979
Alignment:
| Q |
205 |
agtgcatctcatcctttttattatatatgaaagaa-aatataattttggaattt |
257 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
23247032 |
agtgcatctcatgacttttattatatatgaaaaaagaatataattttggaattt |
23246979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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