View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1516_low_14 (Length: 408)

Name: NF1516_low_14
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1516_low_14
NF1516_low_14
[»] chr7 (1 HSPs)
chr7 (184-353)||(20291216-20291388)
[»] chr1 (3 HSPs)
chr1 (25-104)||(10850648-10850728)
chr1 (165-230)||(52682285-52682351)
chr1 (184-229)||(52976549-52976594)
[»] chr3 (4 HSPs)
chr3 (11-104)||(19432474-19432571)
chr3 (47-99)||(36137065-36137118)
chr3 (46-99)||(36143745-36143799)
chr3 (166-230)||(33720097-33720162)
[»] chr8 (2 HSPs)
chr8 (11-108)||(5857927-5858025)
chr8 (166-230)||(36074460-36074525)
[»] chr4 (1 HSPs)
chr4 (281-390)||(40822482-40822589)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 184 - 353
Target Start/End: Original strand, 20291216 - 20291388
Alignment:
Q  184 tcaaatatctcagaattatatagacggtgtcaaggtgtttttcataaattgttgacgactttgacagagaaggcaatatcaggccatgc---acatgcat 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||| |||||||||| ||     |||||     
T  20291216 tcaaatatctcagaattctatagacggtgtcaaggtgtttttcataaattgttgacaacgttaacagagaaggcagtatcaggccaggccatgtatgcac 20291315  T
Q  281 cgagtaaatcaattctccaagcaatctttagtatcttcctgtgtcaagtgtgtcccctttttcccgaagtttt 353  Q
    |||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| || |||||||    
T  20291316 cgagtaaaccaattctccaagtaatctttagtatcttcctatgtcaagtgcgtcccctttttgccaaagtttt 20291388  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 10850728 - 10850648
Alignment:
Q  25 taggaaacctatataagctgtaatgctactatgatttcactaatga-aaatatattccattcatttcttctcttcataata 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  10850728 taggaaacccatataagctgtaatgctactatgatttcactaatgagaaatatattccattaatgtcttctcttcataata 10850648  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 52682285 - 52682351
Alignment:
Q  165 gccttttccgagggtagcct-caaatatctcagaattatatagacggtgtcaaggtgtttttcataa 230  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||  |||||||||| |||||||    
T  52682285 gccttttccgagggcagccttcaaatatctcagaattctatagacggcatcaaggtgttcttcataa 52682351  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 52976549 - 52976594
Alignment:
Q  184 tcaaatatctcagaattatatagacggtgtcaaggtgtttttcata 229  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||    
T  52976549 tcaaatatctcagaattctatagacggcgtcaaggtgttcttcata 52976594  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 19432474 - 19432571
Alignment:
Q  11 ttattctagtcatctaggaaacctatataagctgtaatgctact---atgatttcactaatg-aaaatatattccattcatttcttctcttcataata 104  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||   ||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  19432474 ttattctggtcatctatgaaagctatataagctgtaatgctactatgatgatttcactaatgaaaaatatatttaattcatttcttctcttcataata 19432571  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 36137118 - 36137065
Alignment:
Q  47 atgctactatgatttcactaatga-aaatatattccattcatttcttctcttca 99  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  36137118 atgctactatgatttcactaatgagaaatatattccattaatgtcttctcttca 36137065  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 36143745 - 36143799
Alignment:
Q  46 aatgctactatgatttcactaatga-aaatatattccattcatttcttctcttca 99  Q
    ||||||| ||||||||||||||||| |||||||||||||| || |||||||||||    
T  36143745 aatgctaatatgatttcactaatgagaaatatattccattaatgtcttctcttca 36143799  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 33720162 - 33720097
Alignment:
Q  166 ccttttccgagggtagcct-caaatatctcagaattatatagacggtgtcaaggtgtttttcataa 230  Q
    ||||||||| ||| ||||| |||||||||||||||| |||||||||  |||||||||| |||||||    
T  33720162 ccttttccgggggcagccttcaaatatctcagaattctatagacggcatcaaggtgttcttcataa 33720097  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 5858025 - 5857927
Alignment:
Q  11 ttattctagtcatctaggaaacctatataagctgtaatgctactatgatttcactaatgaaaat-atattccattcatttcttctcttcataatatggt 108  Q
    |||||||| ||||| ||||   ||||||||| ||||||||||||||| ||||  |||||| ||| ||| | ||||||||||||||||||||||||||||    
T  5858025 ttattctactcatcaaggatctctatataagttgtaatgctactatgttttcgttaatgagaattatacttcattcatttcttctcttcataatatggt 5857927  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 36074460 - 36074525
Alignment:
Q  166 ccttttccgagggtagcct-caaatatctcagaattatatagacggtgtcaaggtgtttttcataa 230  Q
    ||||||||| ||| ||||| |||||||||||||||| |||||||||  |||||||||| |||||||    
T  36074460 ccttttccgggggcagccttcaaatatctcagaattctatagacggcatcaaggtgttcttcataa 36074525  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 390
Target Start/End: Complemental strand, 40822589 - 40822482
Alignment:
Q  281 cgagtaaatcaattctccaagcaatctttagtatcttcctgtgtcaagtgtgtcccctttttcccgaagttttcttttcgagtccatatgggagtatcac 380  Q
    |||||||| ||||| |||||| || |  | |||||||||||||||||| |||||||||||||||| ||||||| | ||  |||||  |||||||| |||     
T  40822589 cgagtaaaccaattttccaagtaaccagtggtatcttcctgtgtcaagggtgtcccctttttcccaaagttttttatttaagtcc--atgggagtgtcag 40822492  T
Q  381 ctggtggtct 390  Q
    ||||||||||    
T  40822491 ctggtggtct 40822482  T

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