View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_15 (Length: 406)
Name: NF1516_low_15
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 51935619 - 51935232
Alignment:
| Q |
1 |
tccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatattttaagccgt |
100 |
Q |
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| T |
51935619 |
tccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaatattttaagccgt |
51935520 |
T |
|
| Q |
101 |
accaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaannnnnnnacaggtgcatccgaccaacacctgaagagctagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51935519 |
accaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaatttttttacaggtgcatccgaccaacacctgaagagctagag |
51935420 |
T |
|
| Q |
201 |
gaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatc |
300 |
Q |
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| T |
51935419 |
gaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagcatagacatgaatc |
51935320 |
T |
|
| Q |
301 |
ttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgcc |
388 |
Q |
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| T |
51935319 |
ttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgcc |
51935232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 167 - 389
Target Start/End: Complemental strand, 28138193 - 28137971
Alignment:
| Q |
167 |
caggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcat |
266 |
Q |
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| T |
28138193 |
caggtgcattcgacctactcctaaagagcttgagaattttggcacaccagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacat |
28138094 |
T |
|
| Q |
267 |
tacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttta |
366 |
Q |
| |
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|||||||| || ||||| || | || | |||||| |||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||| |
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| T |
28138093 |
tacatgacatcttcaaccagtgttgatcttaatctttcaaggaaggaaatggtcattcttggaacacaatatgctggtgaaatgaagaagggtcttttta |
28137994 |
T |
|
| Q |
367 |
gtttaatgcactacctcatgcct |
389 |
Q |
| |
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|| | ||||| || ||||||||| |
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| T |
28137993 |
gtgtcatgcattatctcatgcct |
28137971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 389
Target Start/End: Complemental strand, 12996152 - 12995929
Alignment:
| Q |
166 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
265 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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| T |
12996152 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
12996053 |
T |
|
| Q |
266 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
365 |
Q |
| |
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|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
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| T |
12996052 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
12995953 |
T |
|
| Q |
366 |
agtttaatgcactacctcatgcct |
389 |
Q |
| |
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||| | ||||| || ||||||||| |
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| T |
12995952 |
agtgtcatgcattatctcatgcct |
12995929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 389
Target Start/End: Complemental strand, 13070805 - 13070582
Alignment:
| Q |
166 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
265 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
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| T |
13070805 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
13070706 |
T |
|
| Q |
266 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
365 |
Q |
| |
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|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
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| T |
13070705 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
13070606 |
T |
|
| Q |
366 |
agtttaatgcactacctcatgcct |
389 |
Q |
| |
|
||| | ||||| || ||||||||| |
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|
| T |
13070605 |
agtgtcatgcattatctcatgcct |
13070582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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