View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_17 (Length: 396)
Name: NF1516_low_17
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 3918327 - 3918699
Alignment:
| Q |
7 |
atgcttgggtgcttccttgattcttgttttgaatgagcaggtgaagccacactagaactttgttcagaaggtggccggctaacacactgttcaaaaatat |
106 |
Q |
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| T |
3918327 |
atgcttgggtgcttccttgattcttgttttgaatgagcaggtgaagccacactagaactttgttcagaaggtggccggctaacacactgttcaaaaatat |
3918426 |
T |
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| Q |
107 |
tcctgtacatagcaagaacatgctgttcgcggcttgtaacctcttcttcaagcaattcaatttcagtaatcaagtcttttgtctaaaaaagggaaaaatt |
206 |
Q |
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| T |
3918427 |
tcctgtacatagcaagaacatgctgttcgcggcttgtaacctcttcttcaagcaactcaatttcagtaatcaagtcttttgtctaaaaaagggaaaaatt |
3918526 |
T |
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| Q |
207 |
agaaataattaatttcacacaacatgaacttataggaaccatagctttcatgaaaatattatgttgtgcaatggcatccccttgccaatcagtatttaaa |
306 |
Q |
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| T |
3918527 |
agaaataattaatttcacacaacatgaacttataggaaccatagctttcatgaaaatattatgttgtgcaatggcatccccttgccaatcagtatttaaa |
3918626 |
T |
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| Q |
307 |
atttcaggaacgagtctctttatgattatcggctatcatcaaactaccattctttacattagaattagctcct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3918627 |
atttcaggaacgagtctctttatgattatcggctatcatcaaactaccattctttacattagaattagctcct |
3918699 |
T |
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