View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_18 (Length: 388)
Name: NF1516_low_18
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 10161751 - 10162124
Alignment:
| Q |
1 |
ggaactcatgcaatcactttcatctgttttcaaaagggtcgttgttattcatgacacatatatggcatcagtggtacaagatgctaaaaacatagcgaat |
100 |
Q |
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| T |
10161751 |
ggaactcatgcaatcactttcatctgttttcaaaagggtcgttgtaattcatgacacatatatggcttctgtggtacaagatgctaaaaacatagcgaat |
10161850 |
T |
|
| Q |
101 |
gttgagaattacatgtttgtcagcacatgtgcttttacagctttcacttccatttgggagagaatgggaaaaactccaattgaaagctcacatatcattg |
200 |
Q |
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| T |
10161851 |
gttgagaattacatgtttgtcagcacatgtgcttttacagctttcacttccatttgggagagaatgggaaaaactccaattgaaagctcacatatcattg |
10161950 |
T |
|
| Q |
201 |
atgttccttctatggaaggatgcttcacaaaccaattcgttgatttcatgatagcacaaaaggaattctgtgaatttagtaatgggagcatctacaatac |
300 |
Q |
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| T |
10161951 |
atgttccttctatggaaggatgcttcacaaaccaattcgttgatttcatgattgcacaaatggaattctgtgaattcagtaatgggagcatctacaatac |
10162050 |
T |
|
| Q |
301 |
aagcagagtaatcgaaggtccttacttggagttgatagagaaaatcacttgcaataagaagcattgggcagtgg |
374 |
Q |
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| T |
10162051 |
aaacagagtaatcgaaggtccttacttggaattgatagagaaaatcacttgcaataagaagcattgggcagtgg |
10162124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 2 - 372
Target Start/End: Original strand, 1608753 - 1609123
Alignment:
| Q |
2 |
gaactcatgcaatcactttcatctgttttcaaaagggtcgttgttattcatgacacatatatggcatcagtggtacaagatgctaaaaacatagcgaatg |
101 |
Q |
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||||||||||| |||||||||||||||||| ||| ||||||||| |||||||| | | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
1608753 |
gaactcatgcattcactttcatctgttttcgaaaaggtcgttgtgattcatgatagtttaatggcatcagtggtacaagatgctaaaaacatagcaaatg |
1608852 |
T |
|
| Q |
102 |
ttgagaattacatgtttgtcagcacatgtgcttttacagctttcacttccatttgggagagaatgggaaaaactccaattgaaagctcacatatcattga |
201 |
Q |
| |
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||||||||||| |||| | || |||||||||||| || |||||||||||||||||||| | |||||||| ||||| |||||||||| ||||| ||||| |
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| T |
1608853 |
ttgagaattactcgtttcttagtacatgtgctttttcaattttcacttccatttgggagaaagtgggaaaacctccatttgaaagctcgcatattattga |
1608952 |
T |
|
| Q |
202 |
tgttccttctatggaaggatgcttcacaaaccaattcgttgatttcatgatagcacaaaaggaattctgtgaatttagtaatgggagcatctacaataca |
301 |
Q |
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||||||||||||||||||||||||||||| | || | ||| ||||| | ||||||| ||||||| |||||| ||| |||| |||||||| |||||| |
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| T |
1608953 |
tgttccttctatggaaggatgcttcacaaccgaaatatatgacttcattaatgcacaaagtgaattctatgaattcagtgatggaagcatctataataca |
1609052 |
T |
|
| Q |
302 |
agcagagtaatcgaaggtccttacttggagttgatagagaaaatcacttgcaataagaagcattgggcagt |
372 |
Q |
| |
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|| ||||| || ||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
1609053 |
agtagagttattgaaagtccttacttggagttgatagagagaatcacttgcagtaagaagcattgggcagt |
1609123 |
T |
|
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