View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1516_low_22 (Length: 368)
Name: NF1516_low_22
Description: NF1516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1516_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 17596727 - 17597070
Alignment:
| Q |
11 |
cacagaccctagaccaatcatcagaaacaaataattactcatctaaccatatcactaatgtttttgaagaatatgcatccaacaatgctaacactcatgt |
110 |
Q |
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| T |
17596727 |
cacaaaccctagaccaatcatcagaaacaaataattactcatctaaccatatcactaatgtttttgaagaatatgcatccaacaatgctaacactcatgt |
17596826 |
T |
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| Q |
111 |
ggaaaatcttgttgctatgtcatcattttcgacgattcataaagacatatacaatttagcgttggagaaacaagcgtcgttggttttgctcccgtttcac |
210 |
Q |
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| T |
17596827 |
ggaaaatcttgttgctatgtcatcattttcgacgattcataaagacatatacaatttagcgttggagaaacaagcgtcgttggttttgctcccgtttcac |
17596926 |
T |
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| Q |
211 |
aagcagaattcaatggaaggttctctagaagtaatgaataccgtgatcaaagacataaaccaaaatgtgatgcaagacgtgccttgttcggttggaatct |
310 |
Q |
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| T |
17596927 |
aagcagaattcaatggaaggttctctagaagtaatgaataccgtgatcaaagacataaaccaaaatgtgatgcaagacgtgccttgttcggttggaatct |
17597026 |
T |
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| Q |
311 |
ttgttgatcgtggtcatcactcggctttaatcaagaccaaaatg |
354 |
Q |
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| T |
17597027 |
ttgttgatcgtggtcagcactcggctttaatcaagaccaaaatg |
17597070 |
T |
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